BAC Information

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BAC

Clone NameMSMg01-277I16
Chromosome11 (Build37)
Map Location 40,234,753 - 40,234,976
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256, LOC100039285
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-277I16.T7 (MSMg01no277_i16.b1)MSMg01-277I16.TJ (MSMg01no277_i16.g1)
ACCAG415414AG415415
length748741
length of high quality
(start - end)
---224 (431 - 654)
definitionCHROMAT_FILE: MSMg01no277_i16.b1 PHD_FILE: MSMg01no277_i16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:42 2005CHROMAT_FILE: MSMg01no277_i16.g1 PHD_FILE: MSMg01no277_i16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:17:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTGTTCTCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATACTTCTACACCGAC
GACAGCTGATCACTTGTTGCACAAGTCTTCCGATTAACGTGGCGGCCC
CGATGAAGTGGGAGGCCTGGCGGCCGCCTGTTTCCCACTGGGAGGTGAAC
TATAGAATTTCCAAGACATCTTGCCACTAGTGCTCAACATGCTTTCTTCA
TGTTCTTTGGTCTACCCCAGTGTGTCACAGTGAGGGGCTTTTGCTCTTCA
ACTAAGGTAATGAAGAGGATTTCACACAAACATATCAAGCAGACCATCTT
CCAGGCAGTTCTAGATTTTGTTGAGTTGAAAATTAAGGACAACAACCCTA
GATTTTTGATTTTTTTCCAGTTTCTAATTTTCTATGATGTTGAAAAACTT
AAAAACTTTACTGTTTGTCATCTCAAATAAAATTATACAACCTCATGATT
TAAATTTCTTCTTTCCCCCCCCCCCCCCCATTTAAGAATAAACACCTTAA
CTCTTTATATTTTTAGAAAAAAAAAAAATTTATTTAAATAGATTCATAAT
TTGCCTGTTATTTGCCAAGAATTATATTAACAATGAGAAGAAACAATTTC
TCTGCCTTAATGAAGTATTTCTATCAGTGCTAAAATTAGAAAGTAAATGA
GAAAGGAAATAATATACTCTTGACAAGTATAAATGTTGGCCATAAAGTTG
TATGGAACAATAAAGTTTATTAAAAAGCAGGAAATAATATTTGACCATAA
ACCTGAATGACATTAAGTACTGCTTTATGCAAAAGCTCCAGGGTTGTGGA
AATAGAATGTATAACACCCAAGGAGGAAAGAATTTACTGAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no277_i16.g1 MSMg01no277_i16.g1 CHROMAT_FILE:
MSMg01no277_i16.g1 PHD_FILE: MSMg01no277_i16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:42 2005
         (224 letters)



>mm_chr11_40234553_40235176
          Length = 624

 Score =  410 bits (212), Expect = e-119
 Identities = 221/224 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttaaatagattcataatttgcctgttatttgccaagaattatattaacaatgagaag 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 tatttaaatagatttataatttgcctgttatttgccaagaattatattaacaatgagaag 365

                                                                       
Query: 61  aaacaatttctctgccttaatgaagtatttctatcagtgctaaaattagaaagtaaatga 120
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 aaacaatttctctgccctaatgaagtatttctatcagtgctaaaattagaaagtaaatga 305

                                                                       
Query: 121 gaaaggaaataatatactcttgacaagtataaatgttggccataaagttgtatggaacaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 304 gaaaggaaataatatactcttgacaagtataaatgttggccataaagctgtatggaacaa 245

                                                       
Query: 181 taaagtttattaaaaagcaggaaataatatttgaccataaacct 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 taaagtttattaaaaagcaggaaataatatttgaccataaacct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 224
Length of database: 624
Length adjustment: 9
Effective length of query: 215
Effective length of database: 615
Effective search space:   132225
Effective search space used:   132225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)