Query= MSMg01no277_i22.b1 MSMg01no277_i22.b1 CHROMAT_FILE:
MSMg01no277_i22.b1 PHD_FILE: MSMg01no277_i22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:43 2005
(239 letters)
>mm_chr11_3071512_3072154
Length = 643
Score = 364 bits (188), Expect = e-105
Identities = 223/244 (91%), Gaps = 18/244 (7%)
Strand = Plus / Minus
Query: 1 gtgtgccatcatcttcctggtttcatagattgttttctattgttagtgatgtgcattttc 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 403 gtgtgccatcatcttcctggtttcatagattgttttctattgtaagtgatgtgcattttc 344
Query: 61 ttggtgaagtgtatcctgctgccttccttgtcatttatagttataatggatatggctgaa 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 343 ttggtgatgtgtatcctgctgccttccttgtcatttatagttataatggatatggctgaa 284
Query: 121 cgttttgtagtagaaaggaaagt-aggttgattttttttt----aaggtataagattgtt 175
||||||||||||||||||||||| || ||||||||||||| |||||||||| |||||
Sbjct: 283 cgttttgtagtagaaaggaaagtcag-ttgatttttttttttttaaggtataagtttgtt 225
Query: 176 cccacagttgggaaaatgggtgttactgaactgctttgcaaggcaagcatgagcacctga 235
|||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 224 cccacagttgggaaaatgggtgtt------------tgcaaggcaagcatgagcacctga 177
Query: 236 gttc 239
||||
Sbjct: 176 gttc 173
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 643
Length adjustment: 9
Effective length of query: 230
Effective length of database: 634
Effective search space: 145820
Effective search space used: 145820
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no277_i22.g1 MSMg01no277_i22.g1 CHROMAT_FILE:
MSMg01no277_i22.g1 PHD_FILE: MSMg01no277_i22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:17:43 2005
(346 letters)
>mm_chr3_3170468_3171213
Length = 746
Score = 184 bits (95), Expect = 8e-51
Identities = 166/191 (86%), Gaps = 6/191 (3%)
Strand = Plus / Minus
Query: 157 gctaggaagggaaaggggctatgtagagaaaagaaggcaaccaaaccacaacaaggaaaa 216
|||||||||||||||||||||||||||||||| || ||||||||| ||||||| |||||
Sbjct: 544 gctaggaagggaaaggggctatgtagagaaaacaaaccaaccaaacaacaacaaagaaaa 485
Query: 217 agaagtaacaatgcagctttg-ggtagggtaccaacaaaagaaagcc--ttcaggtagca 273
||||| ||| || ||| ||| | |||||||||| ||| |||| ||| || | || ||
Sbjct: 484 tgaagtgacagtgtagc-ttgagatagggtaccagcaagagaaggccattt--gttacca 428
Query: 274 gttacaaacaccagtagctttgcacccttgtgccccggttcctgccttcctttctaggaa 333
||||||||||||||||| |||||||||| ||||| ||||||||||||||||||||||||
Sbjct: 427 cttacaaacaccagtagccttgcacccttctgcccaggttcctgccttcctttctaggaa 368
Query: 334 atctagggatg 344
|||||||||||
Sbjct: 367 atctagggatg 357
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 4
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 346
Length of database: 746
Length adjustment: 9
Effective length of query: 337
Effective length of database: 737
Effective search space: 248369
Effective search space used: 248369
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
