BAC Information

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BAC

Clone NameMSMg01-278A18
Chromosome11 (Build37)
Map Location 61,403,959 - 61,404,234
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC624403, LOC624424, OTTMUSG00000007757, LOC668206, Llgl1, Flii, Smcr7, Top3a, LOC100042517, Smcr8, Shmt1, LOC625958, LOC637900, Dhrs7b, Tmem11, Gtlf3b, Map2k3, Kcnj12, LOC668228, Tnfrsf13b, Usp22, LOC668239, Aldh3a1, Aldh3a2, 4933429E10Rik, 1300013J15Rik, LOC100042602, LOC626150, Zfp179, Mfap4, Mapk7, 3110043A19Rik, Eppb9, Epn2
Downstream geneGrap, Slc5a10, 2310040C09Rik, Prpsap2, Ulk2, Akap10, D630015H07, LOC626325, LOC100041558, Specc1, Adora2b, 2410012H22Rik, Ttc19, Ncor1, Pigl, Prr6, Ubb, Trpv2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278A18.T7 (MSMg01no278_a18.b1)MSMg01-278A18.TJ (MSMg01no278_a18.g1)
ACCAG415778AG415779
length694697
length of high quality
(start - end)
271 (424 - 694)276 (77 - 352)
definitionCHROMAT_FILE: MSMg01no278_a18.b1 PHD_FILE: MSMg01no278_a18.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:16 2005CHROMAT_FILE: MSMg01no278_a18.g1 PHD_FILE: MSMg01no278_a18.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:18:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGCCTATCCGCAGCTAGGGATGTAGCTCAGTAGTAGAGCCCTCTCC
TAGATGCACAAGGCCCCCTTCAGCACCAGGCATGCAGGCATGTGTGCATA
TACACAGGAACAACAGTGAGCACCGCAAAATACTTGTATCTTCAGGACTG
CAAACACAAAAGTTTTAGAAGGTAGCTGGGCGCCTACATCCGGAGGTTCA
TAACTGCCTGTAACTAGCTGTAGAGTTTCCAGCACCTTCTTTCAGACTCT
GCAGGCACCTACTCTTACATACTAGACACTAGACAGATAATTCCTTTAAA
ATATTTTTGTCCTNAGTCGGTGCCCTGGNACAGCCTGTGATTCCATCTCC
CTGGAGGCACCAAGAAAAATAACTACTTCTCTACCTGGGATGAGGCAAAT
ATCCTTTTTTTTTTTCTTGTTTGACCTTTTACAAAGTTATCAATTATCAT
AGAAAAGAAAATGAATACCCAGGAGGCTGAGGCAGAAGGATTGCTGCATG
TTTGAGACCAGTTTGAGGACATAGTGCATGTGTGTGCTCTTCTCTGACCT
TCATACGCATGCTGTGGCACACATGTCCCATACATATACACACTAATGCT
CACACACAATAAAATGTGGTATACACACACACACATCTGACCTC
CGCTGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATGCTTGAATCGCGTTGGTTTTTA
CCCCAGGCCCTTTCACCCATGTTTTATATGCAGTAACAAATCACTTCCTG
CTTGTTTAAAAAAAAAAAATGTAGAGAGAAAAAAGTTGCCACCAAGCTGG
GAACTGTCCCCAGTAGTCTGATGGCTCCTAGCCTGCATCACAGTCTATGC
CAGCATCAGCTGATCATTTGGAACAAAATGTCCAAATCTGAGACTGGGAT
GAGCTCGCTGGATGTGTGGTCTCCAGTGCCGTGGTCCAAACAAATCCTAG
TTTTTTTTTTGACCAGTTCANATCGCCTCCCTCAGGGCCTTCACTTTCCA
ACCAGCTCGCTAGAGCTAACAAAAATAACATTACTATCTTAAGACTTCTG
CCAGGGTCTCATGAGAGGGGTCAGGTCAGAATGCGTCCACACTCTGTTTC
CTCAATTTCCTGTCTGAACCTCATTTCTCTCAGCTGTTTAAAAAAAAAAA
TGGATAGAATACTCCCACTTCATTTGCATTACTCACTGAAGGAGAGATTC
CTATTCCTCCTAAGATTTGAAAGTGCTGTGTATACAAGGAAATGTGGTGT
GACCTTTGGGGCTGCCCCAACTATGTATTGCTGCTTTGAGAATAGCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_a18.g1 MSMg01no278_a18.g1 CHROMAT_FILE:
MSMg01no278_a18.g1 PHD_FILE: MSMg01no278_a18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:17 2005
         (276 letters)



>mm_chr11_61403759_61404436
          Length = 678

 Score =  507 bits (262), Expect = e-148
 Identities = 272/276 (98%), Gaps = 2/276 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   atgcttgaatcgcgttggtttttaccccaggccctttcacccatgttttatatgcagtaa 60
           |||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 atgcttgaatcgggttggtttttaccccaggccctttcacccatgttttatacgcagtaa 260

                                                                       
Query: 61  caaatcacttcctgcttgtttaaaaaaaaaaaa--tgtagagagaaaaaagttgccacca 118
           |||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||
Sbjct: 261 caaatcacttcctgcttgtttaaaaaaaaaaaaaatgtagagagaaaaaagttgccacca 320

                                                                       
Query: 119 agctgggaactgtccccagtagtctgatggctcctagcctgcatcacagtctatgccagc 178
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 agctgggaactgtccccagtagtctgatggctcctagcctgcatcacagtctatgccagc 380

                                                                       
Query: 179 atcagctgatcatttggaacaaaatgtccaaatctgagactgggatgagctcgctggatg 238
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atcagctgatcatttggaacaaaatgtccaaatctgagactgggatgagctcgctggatg 440

                                               
Query: 239 tgtggtctccagtgccgtggtccaaacaaatcctag 274
           ||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgtggtctccagtgccgtggtccaaacaaatcctag 476


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 276
Length of database: 678
Length adjustment: 9
Effective length of query: 267
Effective length of database: 669
Effective search space:   178623
Effective search space used:   178623
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)