Query= MSMg01no278_h24.b1 MSMg01no278_h24.b1 CHROMAT_FILE:
MSMg01no278_h24.b1 PHD_FILE: MSMg01no278_h24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:50 2005
(315 letters)
>mm_chr11_54174500_54175215
Length = 716
Score = 586 bits (303), Expect = e-172
Identities = 309/311 (99%), Gaps = 1/311 (0%)
Strand = Plus / Minus
Query: 4 ggaattctgtgaacattgcgaatatattacttttagtggtacacagttcttcagaaagtg 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 514 ggaattctgtgaacattgcgaatatattacttttagtggtacacagttcttcagaaagtg 455
Query: 64 tcttgatttgtttttacattaccgtttgcgataa-tttttttagcagcttgctacaatat 122
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 454 tcttgatttgtttttacattaccgtttgcgataattttttttagcagcttgctacaatat 395
Query: 123 catttaataaaaataaagtgtacttggtgatggtagagaaaatattgttagagacttctt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 394 catttaataaaaataaagtgtacttggtgatggtagagaaaatattgttagagacttctt 335
Query: 183 gggtcaggaaaggctcagttgcaaaaatcaggtgcttgttcactttgagctgtggcattc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 334 gggtcaggaaaggctcagttgcaaaaatcaggtgcttgttcactttgagctgtggcattc 275
Query: 243 tgattcctttctctcacgaataactataatattgctgctaagttcatcggactgagacgg 302
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 274 tgattcctttctctcacgaataactataatattgctgcaaagttcatcggactgagacgg 215
Query: 303 gccctcctgga 313
|||||||||||
Sbjct: 214 gccctcctgga 204
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 716
Length adjustment: 9
Effective length of query: 306
Effective length of database: 707
Effective search space: 216342
Effective search space used: 216342
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no278_h24.g1 MSMg01no278_h24.g1 CHROMAT_FILE:
MSMg01no278_h24.g1 PHD_FILE: MSMg01no278_h24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:18:50 2005
(290 letters)
>mm_chr11_54021939_54022628
Length = 690
Score = 493 bits (255), Expect = e-144
Identities = 278/293 (94%), Gaps = 13/293 (4%)
Strand = Plus / Plus
Query: 1 cattaccttcttctggtctctgagaggctccggaggtggacacaggaaccctcagcactg 60
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 cattaccttcttctggtctctgagaggctccggaggtggacacaggaagtctcagcactg 260
Query: 61 aaaggtcttccgtggcgcacatctcacaccttaacctcaagggagatttcctcttcttct 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaggtcttccgtggcgcacatctcacaccttaacctcaagggagatttcctcttcttct 320
Query: 121 ccccttcctgggatggagcacttcaatccccacaagtttcctttgaagtcactgcagagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccccttcctgggatggagcacttcaatccccacaagtttcctttgaagtcactgcagagt 380
Query: 181 gggtggagagagacaagaatgccattctgggctgaaccttcttggtaaacgtagaagtgg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gggtggagagagacaagaatgccattctgggctgaaccttcttggtaaacgtagaagtgg 440
Query: 241 atcaatattttttt------gaagggtatttttctgaaccacaccacccccag 287
||||||| |||||||||||||||||||||||||||||||||
Sbjct: 441 atcaata-------aaaaccgaagggtatttttctgaaccacaccacccccag 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 690
Length adjustment: 9
Effective length of query: 281
Effective length of database: 681
Effective search space: 191361
Effective search space used: 191361
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
