BAC Information

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BAC

Clone NameMSMg01-278O16
Chromosome11 (Build37)
Map Location 27,147,775 - 27,148,089
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100042345, Fancl, Vrk2, EG628586, Ppia-ps11_266.1, OTTMUSG00000005300, LOC666270, LOC100042367
Downstream geneLOC100042377
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-278O16.T7 (MSMg01no278_o16.b1)MSMg01-278O16.TJ (MSMg01no278_o16.g1)
ACCAG416422AG416423
length711766
length of high quality
(start - end)		323 (45 - 367)288 (131 - 418)
definitionCHROMAT_FILE: MSMg01no278_o16.b1 PHD_FILE: MSMg01no278_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:23 2005CHROMAT_FILE: MSMg01no278_o16.g1 PHD_FILE: MSMg01no278_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:23 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCACATTCTCTGCAAGAACATCCAAATCTATTAATTGTCAAGACATGT
CTGCATCTACTCAAAAATATTATCAATGTTTAGATTTATAGTGATCCTCT
GACAAAGATTTTTTTTTACTTAATATGATATATAAACTGATTTTCCCCCA
AAGCTACAAAATCACTGTTTAAATTGGAACTAAACTTTGACCCAGCCCAT
ACTTCCTGCTTCCATATGGCTTCACAATCAAAGTCCTTTTTGTTTGTTTT
AGTTCATTTTAAAAGATTGTAGGTTGCTTAATAGAAAATATTTGTCCTTT
AGCATTTGTCTCATAACCGACGGATATTCATGCCATTAACTTTATGAGTG
TTTGCAATACAGAAGCTGGATTTATTAAAAATTATTGAGAAAAAAGATAT
ATTAGAAAAATTGAAAGAAATTCTGAGTGTGCAAAGAGTATATATGAAAG
AAAGAAGACAATTGAGCTTCTGGTCTAGAGTTTTCATAGGGACATGGCAG
AAACTGGACACAGAATGAGGCAATTTCTATTAAAAATAGTCAATACACTG
AACTATCAATCAATAGCTAGCCAGTGGAAGGTCTACATGCTCTGTGCATG
CTACCCTGGTTTTATCAAGGATATGACTGCACATCGTAACTACATTTTGG
ACTGATACTAN

NNNNNNNNNNCCCCCCCCCCNTTNCCTTCCTTNCTCCCCCNNNNNNNNNN
CCTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGAACATTCCAAGCCTTTT
ACCATGAACAGGTGTTGGATTTTGTCAAATGATTTCTCAGCATCTAATGA
GATGATCATTTTTTTTCTTTGAGTTTGTTTATATAGTGGATTACATTGAT
GGAATCATTCTGTATTTTGAACCATCCCTGCAACCCTGGAATGAAGCCTA
TTTGATCATGATGGATGATCCTTTTAATGCATTCTTGAATTCGGTTTGTG
AGATTTTATTGAGTATTTGCATCTATATTCATAAGGAAAATTGGTATGAA
ATTCTCTTCTTTTTGGTGGGCGCCTGCGCCTTTCTGTGGTTTAGGTATCA
GAGTAAATGTGGCTTCATAGAATGAATTGGGTAGAGTACCTTCTTTTTCT
ATTTTGTGGGATAGTATGAAAGTATTGGAAATTGCCTTCTTTGAAAGTTT
TATAGAACTCTACACTAAACCCATCTGGTCCTGGGCTTTTGTTTTATGCC
AGCCCACAGCGTACATGAACTGAGTACACCTGGGAGGCAGGCTGAGGCTG
AAAGAGACTTAGACTGTGAGAGAAATTAATGGAGACCAAAACACATTTTC
TGTTCAAGGCCCATAAGTTTACTAAGAGACCGTGCTTACAAGGGGGAAGG
CCAACCCCACCCCACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no278_o16.b1 MSMg01no278_o16.b1 CHROMAT_FILE:
MSMg01no278_o16.b1 PHD_FILE: MSMg01no278_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:23 2005
         (323 letters)



>mm_chr11_27147571_27148290
          Length = 720

 Score =  592 bits (306), Expect = e-173
 Identities = 314/318 (98%), Gaps = 3/318 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcacattctctgcaagaacatccaaatctattaattgtcaagacatgtctgcatct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcacattctctgcaagaacatccaaatctattaattgtcaagacatgtctgcatct 264

                                                                       
Query: 65  actcaaaaatattatcaatgtttagatttatagtgatcctctgacaaagattttttttta 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |
Sbjct: 265 actcaaaaatattatcaatgtttagatttatagtgatcctctgacaaagatttttt---a 321

                                                                       
Query: 125 cttaatatgatatataaactgattttcccccaaagctacaaaatcactgtttaaattgga 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 cttaatatgatatataaactgattttcccccaaagctacaaaatcactgtttaaattgga 381

                                                                       
Query: 185 actaaactttgacccagcccatacttcctgcttccatatggcttcacaatcaaagtcctt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 actaaactttgacccagcccatacttcctgcttccatatggcttcacaatcaaagtcctt 441

                                                                       
Query: 245 tttgtttgttttagttcattttaaaagattgtaggttgcttaatagaaaatatttgtcct 304
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 442 tttgtttgttttagttcattttaaaagattgtaggttgcttaataaaaaatatttgtcct 501

                             
Query: 305 ttagcatttgtctcataa 322
           ||||||||||||||||||
Sbjct: 502 ttagcatttgtctcataa 519


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 720
Length adjustment: 9
Effective length of query: 314
Effective length of database: 711
Effective search space:   223254
Effective search space used:   223254
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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