BAC Information

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BAC

Clone NameMSMg01-279B13
Chromosome11 (Build37)
Map Location 112,384,602 - 112,570,903
singlet/doubletdoublet
Overlap geneEG667038, LOC100041610, LOC671963, LOC667047, BC006965
Upstream geneLOC100041559, EG629966, LOC629967, LOC100041589, LOC100043020, EG668396
Downstream geneSox9, 2610035D17Rik, Slc39a11, Sstr2, Cog1, D11Wsu99e, D11Wsu47e, D11Ertd636e
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279B13.T7 (MSMg01no279_b13.b1)MSMg01-279B13.TJ (MSMg01no279_b13.g1)
ACCAG416549AG416550
length756888
length of high quality
(start - end)		332 (36 - 367)243 (77 - 319)
definitionCHROMAT_FILE: MSMg01no279_b13.b1 PHD_FILE: MSMg01no279_b13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:36 2005CHROMAT_FILE: MSMg01no279_b13.g1 PHD_FILE: MSMg01no279_b13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:36 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(112,570,576 - 112,570,903)(112,384,602 - 112,384,817)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTATTT
TTATTTGCCCAATGTTGAGAATATTTTCTTTTTCTCGGTCTGCGTTTCCT
GAGTTGTGTGGATTTCTCCGGAGCTAACAAAGCTTTTCCAATGATGGTCA
AAGAGAAACAACTCAAACCTCTGACATGGAGTTGTACCTGGAACATTGGA
GAGTTTTAGCTAGTGTTTGTCTATCAAAGGGGAACCTGAATAGTTCTTGC
GACTATAGGTATTGATTTATGAAGCGTGTGATTTTGTGTGTTTACACACA
TACCTGCTTTCTTAGTGCAAATTTCAGATATTTCACCCAATTCACATTTT
TAAACTGTTTTATTTAATCTATCAGCGGCTAGTATTTGGTCATCAATCGA
TTGCCTCACCACCACTCGAATATCTTTGCATTCTTCACCTTCCAGTGTCA
TCCCCAGCTAGTCTGCATACTTCGGTAGTCTGTTATAAATGTTTTCTCTC
AGGCTCTATCTTGACACTCACGGCAATGTAAATATGTGAATGCCAAGTCC
TAGAATATAATAGAATTTATTTTCCTTTTACTCCCGATGAGAGGCTTATA
ATGGCCAGGAGAGCTATTGGTAGCCCATGGGTAAAAGGGAGAGAAAATAT
AATCATCACTAATATATAGTTGCCATCTACGGCTATGGTCTGATAAACAG
TTTTCCTATTTAATGCTGGGTGAAAGGATTGCCATGGATGTCCGGCCTTT
GGTATT

ACGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGATAAACCCTAGGTACCAA
GCCAAGGCCCCACACTGGACTGCCAGTTCCGGAGTCCTCTCTGCTACCTC
TGTCATGTTAATTATTTAAAAGCATCACAATGCTCTTTATTCTAGATACT
TAAATATCTGGGCTCCTTTCCTGCTAGACTCATCACCTCTAAAGTTGCAG
GATATAAAAATGATGATTTGAAACAAGAAGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGTGTGGTGNGTTNTNNNNTTTTTTTTTTATATAATTATAAAAA
AAAATATATAATAATTTTANATANTTTCCCCNAAACANACCCCCTTTTTA
TATATATATATAGAAAATTTTTCCCCCCCCCCNNATAAAAAAAAAAAAAA
AAAAATTTGGGGGGGGGGGGGTTCTTCTATTTATATATTCTCTATTTCTT
CTCTTTATTCACATTTTTATCTATTTATTTCACTATAATATACTTCATTT
TATAATTAAATATAATTCTAATTATATATTCCTGAATATTTTTTTATTTA
ATGTATCGATATCCATCTCTATCATTATCTATTCTCTTAACATTCATATA
ATACATTATATATATATCTTGTTCTACACCTTAATTTACTATTCCCCTCT
ATTCTAATCTTTATTCGCATCTCTTTGAATTAAGAATATATCATTTTTTC
TTGTATTATAATTTATTTTTATTATACTATATTAATTCATAATCAATTTT
ATTTCTTACCCTCATCTTGTATGTTATTACTATCTCTACCTTACCATAAA
TATCTCAGTGTTTCTTCACTTTCTTGCACCTCCCTACG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_b13.b1 MSMg01no279_b13.b1 CHROMAT_FILE:
MSMg01no279_b13.b1 PHD_FILE: MSMg01no279_b13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:36 2005
         (332 letters)



>mm_chr11_112570372_112571103
          Length = 732

 Score =  611 bits (316), Expect = e-179
 Identities = 325/328 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctatttttatttgcccaatgttgagaatattttctttttctcggtctgcgtttcc 64
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 532 gaattctatttttatttgctcaatgttgagaatattttctttttctcggtctgcgtttcc 473

                                                                       
Query: 65  tgagttgtgtggatttctccggagctaacaaagcttttccaatgatggtcaaagagaaac 124
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 472 tgagttgtgtggatttctccggagctaacaaagcttttccaacgatggtcaaagagaaac 413

                                                                       
Query: 125 aactcaaacctctgacatggagttgtacctggaacattggagagttttagctagtgtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 412 aactcaaacctctgacatggagttgtacctggaacattggagagttttagctagtgtttg 353

                                                                       
Query: 185 tctatcaaaggggaacctgaatagttcttgcgactataggtattgatttatgaagcgtgt 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 tctatcaaaggggaacctgaatagttcttgcgactataggtattgatttatgaagcgtgt 293

                                                                       
Query: 245 gattttgtgtgtttacacacatacctgctttcttagtgcaaatttcagatatttcaccca 304
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 292 gattttgtgtgtttacacacatatctgctttcttagtgcaaatttcagatatttcaccca 233

                                       
Query: 305 attcacatttttaaactgttttatttaa 332
           ||||||||||||||||||||||||||||
Sbjct: 232 attcacatttttaaactgttttatttaa 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 732
Length adjustment: 9
Effective length of query: 323
Effective length of database: 723
Effective search space:   233529
Effective search space used:   233529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_b13.g1 MSMg01no279_b13.g1 CHROMAT_FILE:
MSMg01no279_b13.g1 PHD_FILE: MSMg01no279_b13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:36 2005
         (243 letters)



>mm_chr11_112384402_112385044
          Length = 643

 Score =  395 bits (204), Expect = e-114
 Identities = 213/216 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccaaagataaaccctaggtaccaagccaaggccccacactggactgccagttccggagtc 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct: 201 ccaaagataaaccctaggtaccaagccaaggtcccacactggactgccagttctggagtc 260

                                                                       
Query: 61  ctctctgctacctctgtcatgttaattatttaaaagcatcacaatgctctttattctaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctctctgctacctctgtcatgttaattatttaaaagcatcacaatgctctttattctaga 320

                                                                       
Query: 121 tacttaaatatctgggctcctttcctgctagactcatcacctctaaagttgcaggatata 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 321 tacttaaatatctgggctcctttcctgctagactcatcacctctaaagttgcagtatata 380

                                               
Query: 181 aaaatgatgatttgaaacaagaagtgtgtgtgtgtg 216
           ||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaaatgatgatttgaaacaagaagtgtgtgtgtgtg 416


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 243
Length of database: 643
Length adjustment: 9
Effective length of query: 234
Effective length of database: 634
Effective search space:   148356
Effective search space used:   148356
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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