BAC Information

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BAC

Clone NameMSMg01-279B14
Chromosome11 (Build37)
Map Location 108,475,422 - 108,475,708
singlet/doubletsinglet
Overlap geneCcdc46
Upstream geneHelz, Cacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381
Downstream geneOlfr1397-ps1, LOC629945, Axin2, E030025P04Rik, LOC194985, Rgs9, 1700096J18Rik, Gna13, 9930022D16Rik, X83328, Slc16a6, Arsg, Wipi1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279B14.T7 (MSMg01no279_b14.b1)MSMg01-279B14.TJ (MSMg01no279_b14.g1)
ACCAG416551AG416552
length769774
length of high quality
(start - end)
289 (71 - 359)287 (77 - 363)
definitionCHROMAT_FILE: MSMg01no279_b14.b1 PHD_FILE: MSMg01no279_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:37 2005CHROMAT_FILE: MSMg01no279_b14.g1 PHD_FILE: MSMg01no279_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:19:37 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGTGTTGTTCCTGAAACCTTTTGTAGGGATAATCTCTTGTGCACT
GTGTGGAAGCATCACCTGTCAATCAAAAGCTGATGGCCAATGAGCTGAGG
CAGAATTAGAAGGTGGGACATCTGGGGAGGAGAGGAACTCTTGGATAGAG
TCAGGCATGAAAGTTTCACTCTTAGGGAGTCAGATGTACGAAACCAGGAG
AGGCATGTAACCAGCCATGGTAGCAGACATAGAATATGCAAATGGTTTTA
TAAGTTATCAGCTAATGGTTAATTAGCCCTAGCTTATGGCCTAGGCACCT
AGTCATACGTATACTAGTCTCTCCGTCGTACCCGGGTACTGGGGTGCAGG
TGGGCAAGCCCACAGTTACTCCTTTGAATAAATACATGGGTGATAGGATC
AAATGCCAGTCTTCATGATAGAGCAGCGCATGCTCCTCACTGATGAGCGC
TCTCCAGACCTCCTCTAGTTACACTTGTGGTTCCGTCGTTGTACTCTTTA
GTCCCCGTGTTTTGTTTTTCTTTTAAAATATTCCCATTATTTAAATTCTC
ATTTTTTTATGTTCAGTGTTTCCAAGTATATTGAGTATTTTGGTGACACT
TATGTATTCTGACAGATTTTTATTTTATTTACTTGTATTCTTGTAATTGA
ATCCAGACCACCTTATTTATTTCTTGGTCCCTTTTCCTTGTTTTGGGAAT
CATGTTTAGGTCTTACTCC
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTGAGACAGACTGTGGAGCAAGG
ACACTGAACTAGGAACCACTAGTGGAGTGGCATTCCCCATGTTGGTGTTG
AGATGTAAAGACTGCACCTTACTGCAAATGAAGCCAGCAGCCTTACCACA
TTCCAACTTTGCAGCAACACTGAGGACAGCAGTACCAAAAGAAACACAAG
CTGCAAGCGCTCAGACACTCCCAGCACAGGAGGCAAAGACCGGGAAGTCT
CCCTCTCTGGGCAAGGCTTTATGTACAAGCTTGTTCCTTTTTTTCTTTTT
TTTCCATGTCCAATTCTCTCCAGAACCCCACCCCCCCTCTTAGATGAGGT
TCTGACATAAAAAAGAGCGAGTTAGTTATTGGATAAGCTGAATATTGCTT
TTATAATGTTTAGGTATGGGCCTGGATTGCAAGCTGGTACAATCACTCCT
GAAGTCAGTCTGGTGGTTCCTTAGAAAATCGGAAATAGTTCTACCTGAGG
ACCCAGCTATGTCACTCCTGTGCATATACCCAAAAGATGTTCCAACATAT
AACAAGGACACGGTGCTCCCCTATGTTCATAGCAGCCTCATTTATAATAG
CCAGAAGCTGGAAACAACCCAGATGTCCTTCAACGGAGGATTGGATACTG
AAAAAGTGGTACATTTTAACTATGGAATACAACTCAGCTATTAATGAATT
CTTGAAATCCTTATGCAATTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_b14.g1 MSMg01no279_b14.g1 CHROMAT_FILE:
MSMg01no279_b14.g1 PHD_FILE: MSMg01no279_b14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:19:37 2005
         (287 letters)



>mm_chr11_108475222_108475908
          Length = 687

 Score =  540 bits (279), Expect = e-158
 Identities = 285/287 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgagacagactgtggagcaaggacactgaactaggaaccactagtggagtggcattcc 60
           ||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 487 actgagacagactatggagcaaggactctgaactaggaaccactagtggagtggcattcc 428

                                                                       
Query: 61  ccatgttggtgttgagatgtaaagactgcaccttactgcaaatgaagccagcagccttac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 ccatgttggtgttgagatgtaaagactgcaccttactgcaaatgaagccagcagccttac 368

                                                                       
Query: 121 cacattccaactttgcagcaacactgaggacagcagtaccaaaagaaacacaagctgcaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 cacattccaactttgcagcaacactgaggacagcagtaccaaaagaaacacaagctgcaa 308

                                                                       
Query: 181 gcgctcagacactcccagcacaggaggcaaagaccgggaagtctccctctctgggcaagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 gcgctcagacactcccagcacaggaggcaaagaccgggaagtctccctctctgggcaagg 248

                                                          
Query: 241 ctttatgtacaagcttgttcctttttttcttttttttccatgtccaa 287
           |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 247 ctttatgtacaagcttgttcctttttttcttttttttccatgtccaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)