BAC Information

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BAC

Clone NameMSMg01-279J10
Chromosome11 (Build37)
Map Location 91,383,412 - 91,549,794
singlet/doubletdoublet
Overlap geneKif2b
Upstream geneStxbp4, LOC100039267, Cox11, Tom1l1, LOC638903, EG664976
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-279J10.T7 (MSMg01no279_j10.b1)MSMg01-279J10.TJ (MSMg01no279_j10.g1)
ACCAG416910AG416911
length755751
length of high quality
(start - end)		320 (45 - 364)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no279_j10.b1 PHD_FILE: MSMg01no279_j10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:13 2005CHROMAT_FILE: MSMg01no279_j10.g1 PHD_FILE: MSMg01no279_j10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:13 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(91,383,412 - 91,383,727)(91,549,509 - 91,549,794)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTAGTCTAGGGATTTTAAATTTCATCAATCAGCTTTCAGTCATGTC
TTGTCCACAAGTGAAGATACCAGTGAGTTGGGGTGCAGCAACAATTGTGG
GGACTTTATGATGATCTTTCTTGGCCGTTCTGAGATGCTAAATGGAGCAG
GATCCATACAAGTTAACCCTGTAGTTATGATTGAATATACTTAAGGATAT
TGGCTAATGGGAGCAGAGATTTTCACCCAGCACAGCTTTTGTGTTGAAAT
ATCTTGAAACTTGGTTATCTTGACTTTTAAAAGCATAGCAGTTTTTGAGG
TGCAGATGCTAACTTGTTTAACACCCACGCCGCCCGATCTTTCCAAGGGA
TACTGGTATGTGTATATGAGTGGGTAGAGGAAATAAGCCAGAATGATAGA
TTTTAGAAGAGATGGCTAACTCCAGAGAACATGGCCTATTTTAGATTCTA
GGTTTTATATGTACATGTAACCATTTCGGACAGGCAGTGCTTTTATAATA
ATTTGTGAGTCAAAGAATGGAAGACAAACACTGTTCTCACAGTTATTCAA
CCTATTTGCTAAACCCGAGCAGAACAGTGCAAATTTGGCTCCCCATCTGA
TGTTGTGCAAACCCTACGTTTATCGGCTTTTTCTGTACCTTATATTTCCT
TTCTATGAAGTTGAGGTTTCATAATTATTTAACTGCCTGTATCTATTCCA
CCCCC

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTAGAATGTAATGAAGTTACAGA
GTGACAAGGAAATCATCTTTGACACAAACTCCTTCCTCTGGCCACCAGCA
TTTGCTACCAGATGTTTGGATTCCCGAGACGGAGGGAGAGCATTCTCAGG
CAAGGCAGACTATTACTTATTCTCTGGGTGAGGTTCACTGTGCTACTTCA
TATATGTATTTTGTTATTTCATTTTCTTCGTCTGTTAGATATTGCAGAAT
ATTCCTCAGCTTACTGAGTCTCTGTGACTACAGTGCCAGGTAAGTTTCTG
ATGCTCAGTGAACTCTATGTTCCCTCGCCCCCCCGCGCACGGACTAGGAA
TAGTTCTGCACCTGGGTTATAGTGGGGCAGAAGAAAATGAAGCTGGGATA
ATGTCCCAAGATGTCATTTCTGACATATCTTAGCCTTAGAACATTTTTTT
TTGGATTTCAGTGTTTTCATATACAAACATGTACATTCTTTAAGTGTCAT
AAATTTCTTTTCAGGCGTTTAGAGTTTTGAGTGAGCTAAGGTCCAGGAAA
ATTTCAAATTAGGAAACGTTTATGTGTTAATCTTCTCCACTCCTCGCCAT
AGTCATCATTCTTGATTAATTGGACCTTTAAGAAGTGACCCCTAAAGAAG
AGTACTTTTTTTTTCTTAATCTTAAACACTAAAATTATTTTTTGCTGGGA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no279_j10.b1 MSMg01no279_j10.b1 CHROMAT_FILE:
MSMg01no279_j10.b1 PHD_FILE: MSMg01no279_j10.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:13 2005
         (320 letters)



>mm_chr11_91383208_91383927
          Length = 720

 Score =  511 bits (264), Expect = e-149
 Identities = 303/316 (95%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctagtctagggattttaaatttcatcaatcagctttcagtcatgtcttgtccac 64
           ||||| ||||||||||||||||||||||||||||||||||||||||| |||| |||||||
Sbjct: 205 gaatttctagtctagggattttaaatttcatcaatcagctttcagtcgtgtcctgtccac 264

                                                                       
Query: 65  aagtgaagataccagtgagttggggtgcagcaacaattgtggggactttatgatgatctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aagtgaagataccagtgagttggggtgcagcaacaattgtggggactttatgatgatctt 324

                                                                       
Query: 125 tcttggccgttctgagatgctaaatggagcaggatccatacaagttaaccctgtagttat 184
           ||||||||| |||||||||||||||| | |||||||||||||||||||||||| ||||||
Sbjct: 325 tcttggccgctctgagatgctaaatgaaacaggatccatacaagttaaccctgcagttat 384

                                                                       
Query: 185 gattgaatatacttaaggatattggctaatgggagcagagattttcacccagcacagctt 244
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gactgaatatacttaaggatattggctaatgggagcagagattttcacccagcacagctt 444

                                                                       
Query: 245 ttgtgttgaaatatcttgaaacttggttatcttgacttttaaaagcatagcagtttttga 304
           ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| |
Sbjct: 445 ttgtgttgaaatatcttgaaacttggtaatcttgacttttaaaggcatagcagtttttca 504

                           
Query: 305 ggtgcagatgctaact 320
           |||  |||||||||||
Sbjct: 505 ggtatagatgctaact 520


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no279_j10.g1 MSMg01no279_j10.g1 CHROMAT_FILE:
MSMg01no279_j10.g1 PHD_FILE: MSMg01no279_j10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:13 2005
         (286 letters)



>mm_chr11_91549309_91549994
          Length = 686

 Score =  530 bits (274), Expect = e-155
 Identities = 283/286 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cctagaatgtaatgaagttacagagtgacaaggaaatcatctttgacacaaactccttcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 486 cctagaatgtaatgaagttacagagtgacaaggaaatcatctttgacacaaactccttcc 427

                                                                       
Query: 61  tctggccaccagcatttgctaccagatgtttggattcccgagacggagggagagcattct 120
           ||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||
Sbjct: 426 tctggccaccagcatttgctaccagatgtttggatccccgagatggagggagagcattct 367

                                                                       
Query: 121 caggcaaggcagactattacttattctctgggtgaggttcactgtgctacttcatatatg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 366 caggcaaggcagactattacttattctctgggtgaggttgactgtgctacttcatatatg 307

                                                                       
Query: 181 tattttgttatttcattttcttcgtctgttagatattgcagaatattcctcagcttactg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 tattttgttatttcattttcttcgtctgttagatattgcagaatattcctcagcttactg 247

                                                         
Query: 241 agtctctgtgactacagtgccaggtaagtttctgatgctcagtgaa 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agtctctgtgactacagtgccaggtaagtttctgatgctcagtgaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 686
Length adjustment: 9
Effective length of query: 277
Effective length of database: 677
Effective search space:   187529
Effective search space used:   187529
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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