TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGTCTGTACCACTACACATGCCTGGTGCCTATGTGTGCCAGAAG
AAGATACCAGATTCCCTGGGAATACAGTTACAGATGTTTGTAGGCCACCG
TGTTGGCACTGGGAATGGAACTTGAGTCTTCTGAAAGAACAGTCAGTGCT
CTTAACCACTGAGCCATCACTCTAGCCCCAGTGTCTGTTTTGTAATGTTC
ATATTTTAGATAGCTGGCTTGAAAACTTAAATCCTTCTGTTGACCAAATG
GCTACAGATTTCTTGATTCTCTTGTTAACATTGGAAAGGGAAAGCCAGGT
GTCTGGGTGTAGTTTGGAACCCTGATTTGCATGAAGTAGACAATTCTTTC
TCCATTCAGTAGTGTAAGGTTACTGTTTAACTTTGCTCTTTTCTACACAT
CCCTCGCCCTCTTTTGTTCAAGGAAAACAGAAATGTGAAGTAGAAAAAGC
AGCCAAGTATCAAGTAGTATATTGAAATGCTAATGTGCAAGCAGAGATAG
CAATCTGTATCGTGAAAGAATAATGCCTTTAAATATCGCAAGGACTACTT
TTATTCCTTTTCTTTAAAATCAACAGAAAGAAAAGAAAATGCTAAATTAT
GTTGACATGTCCCAGTTAAGGCTGGCTTTTGAAATTCCCAAACCAAGAGA
AGTTAGTCTCGGTAGGAAACATAGATGTAACCCCCAGATATCTCCTTATN

CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCATGCATGTATACAATGAAAAATT
TGACTCCTCATACCCCTCTTTGAACCACGTTCTCTTGTATCTAAAATGGC
TTAAAGTTCCTGTATACCTGGGGCTGACTTCTGATTTTCTTTCTTCTGCC
TTCCAAGTGCTGGGACCACCAGTGTGTCTGTTCTCTTCCTGATCTCTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTGTGTGTGTGTGTGCGTTTTTTATTTTTCCTCTAAATTTTTTAC
ATTTCGAGTATTTATTTTTTTTTCCCCCCCCCCCCCCGGGTGATGTAATT
ACATGTTTTTGTCCTTTATTTGGTTGAAGAAAAAAGAATTTCAATCTCTA
AATGTGTGTGTGTGTGTGTGCATGTGTGTATGTGCATGTATATGTGTGTG
TGTATGTGAGGTTGTAAATTTATATATGTATATTATTTTTATATCACAAT
CATTTATTACTCTCAACCTTAATACTTTTCATATAAATAAACTTCTCATA
TAAAAAATAACAATTCCTTAATTTAATTTTTATATCTCTTTCTATCTTTC
TCTATTATCACATACTCCATTAAATTATATATATAAAACTTAATAAATAA
CAATATATTAAAAAAACATAAAAACAACATAATAGATAAACTCCTACCTT
CACATTGATTTATATTATTATTATAACAGT

Query= MSMg01no279_l21.b1 MSMg01no279_l21.b1 CHROMAT_FILE:
MSMg01no279_l21.b1 PHD_FILE: MSMg01no279_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:25 2005
         (646 letters)



>mm_chr11_47927507_47928552
          Length = 1046

 Score = 1181 bits (611), Expect = 0.0
 Identities = 635/643 (98%), Gaps = 1/643 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatgtctgtac-cactacacatgcctggtgcctatgtgtgccagaagaagatacc 63
           |||||||||||||||| || |||||||||||||||||| |||||||||||||||||||||
Sbjct: 204 gaattcatgtctgtacacagtacacatgcctggtgcctgtgtgtgccagaagaagatacc 263

                                                                       
Query: 64  agattccctgggaatacagttacagatgtttgtaggccaccgtgttggcactgggaatgg 123
           |||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 264 agattccctgggaatagagttacagatgtttgtaggccaccatgttggcactgggaatgg 323

                                                                       
Query: 124 aacttgagtcttctgaaagaacagtcagtgctcttaaccactgagccatcactctagccc 183
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 aacttgagtcttctaaaagaacagtcagtgctcttaaccactgagccatcactctagccc 383

                                                                       
Query: 184 cagtgtctgttttgtaatgttcatattttagatagctggcttgaaaacttaaatccttct 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagtgtctgttttgtaatgttcatattttagatagctggcttgaaaacttaaatccttct 443

                                                                       
Query: 244 gttgaccaaatggctacagatttcttgattctcttgttaacattggaaagggaaagccag 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 gttgaccaaatggctacagatttcttgattctcttgttaacattggaaagggaaagccag 503

                                                                       
Query: 304 gtgtctgggtgtagtttggaaccctgatttgcatgaagtagacaattctttctccattca 363
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 gtttctgggtgtagtttggaaccctgatttgcatgaagtagacaattctttctccattca 563

                                                                       
Query: 364 gtagtgtaaggttactgtttaactttgctcttttctacacatccctcgccctcttttgtt 423
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 564 gtagtgtaaggttactgtttaactttgctcttttctacacatccctcaccctcttttgtt 623

                                                                       
Query: 424 caaggaaaacagaaatgtgaagtagaaaaagcagccaagtatcaagtagtatattgaaat 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 caaggaaaacagaaatgtgaagtagaaaaagcagccaagtatcaagtagtatattgaaat 683

                                                                       
Query: 484 gctaatgtgcaagcagagatagcaatctgtatcgtgaaagaataatgcctttaaatatcg 543
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 684 gctaatgtgcaagcagagatagcaatctgtatcgtgaaagaataatgcctttaaatatcg 743

                                                                       
Query: 544 caaggactacttttattccttttctttaaaatcaacagaaagaaaagaaaatgctaaatt 603
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 744 caaggactacttttattccttttctttaaaatcaacagaaagaaaagaaaatgctaaatt 803

                                                      
Query: 604 atgttgacatgtcccagttaaggctggcttttgaaattcccaa 646
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 804 atgttgacatgtcccagttaaggctggcttttgaaattcccaa 846


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 646
Length of database: 1046
Length adjustment: 10
Effective length of query: 636
Effective length of database: 1036
Effective search space:   658896
Effective search space used:   658896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)