BAC Information

Click to search

BAC

Clone NameMSMg01-280C13
Chromosome11 (Build37)
Map Location 99,994,800 - 99,995,090
singlet/doubletsinglet
Overlap geneKrt15
Upstream geneCcr7, Smarce1, Krt222, Krt24, LOC100040200, Krt25, Krt26, Krt27, Krt10, A830036E02Rik, Krt20, Krt23, Krt39, Krt40, Krtap3-3, Krtap3-2, Krtap3-1, 2310043L02Rik, OTTMUSG00000004966, LOC435273, 2310040M23Rik, LOC100041412, LOC100041488, Krtap2-4, LOC100041477, A030010K20Rik, 1110033F04Rik, Krtap4-7, LOC546511, LOC100040248, 1110054P19Rik, LOC665922, LOC100040276, LOC665992, LOC665998, LOC670464, LOC670472, LOC670482, 2300006N05Rik, LOC670496, LOC629924, OTTMUSG00000002196, OTTMUSG00000002191, Krtap9-1, LOC670533, 4733401H21Rik, LOC670550, LOC630936, OTTMUSG00000002177, LOC435286, A030006P16Rik, Krt33a, Krt33b, Krt34, Krt31, Krt32, Krt35, Krt36, Krt13
Downstream geneKrt19, Krt9, Krt14, Ka11p, LOC666128, Krt16, Krt17, Krt42, LOC100041796, LOC100040491, Eif1, Gast, Hap1, LOC100041835, Jup, 1110036O03Rik, Fkbp10, Nt5c3l, Klhl10, Klhl11, Acly, Ttc25, Cnp1, Dnajc7, Nkiras2, A930006D11Rik, D11Lgp2e, Gcn5l2, Hspb9, Rab5c, LOC380728, Hcrt, Ghdc, Stat5b, Stat5a, Stat3, Ptrf, Atp6v0a1, Naglu, Hsd17b1, Coasy, Mlx, Psmc3ip, 1300010M03Rik, Tubg1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280C13.T7 (MSMg01no280_c13.b1)MSMg01-280C13.TJ (MSMg01no280_c13.g1)
ACCAG417322AG417323
length762756
length of high quality
(start - end)		696 (46 - 741)292 (76 - 367)
definitionCHROMAT_FILE: MSMg01no280_c13.b1 PHD_FILE: MSMg01no280_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:56 2005CHROMAT_FILE: MSMg01no280_c13.g1 PHD_FILE: MSMg01no280_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:20:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGATTCCCACCGAATGGCAGAGAAGCACTTGAAAAAATGT
TCAACATCCTTAATCATCATGGAAATGCAAATCAAAACAACCCTGAGATT
CCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCA
GATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGG
GAATGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAG
AAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCA
TATATCCAGAAGATGCCCCAACAGGTAAGAAGGACACATGCTCCACTATG
TTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCTAGATG
CCCCTCAACAGAGGAATGGATACAGAAAATGTGGTAAATCTACACAATGG
AGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCAAA
TGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAAG
AAACTCACACAATATGTATTCACTGATAAGTGGATATTAGCCCCAAACCT
AGGATACCCAAGATATAAGATATAATTTGCTAAACACATGAAACTCAAGA
AGAATGAAGACTGAAGTGTGAACACTATGCCCCTCCTTAGATTTGGGACA
AAACACCCATGG

CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAGCAGTCAACTGGCTGGCCAGGTCA
ATGTGGAAATGGACGCAGCTTCTGCCGTGGACCTGACCCGCATGCTGGCA
GAGATGAGGGAGCAGTATGAAGCTATTGCAGAGAAAAACCGTCGGGATGT
AGAGGCCTGGTTCTTCAGTAAGGTGGGTCTGACCCCCTCCTCACACCCCC
AACTCCAGCTCTGCTCTACCTCTCCTCCCCTCTCCAGAAGCCTCTGAGGA
GGCCCATGAGGCTCATGTTTCTTATCCGTGACTTGCAGACTGAAGAGCTG
AACAAGGAGGTGGCGTCTAACACAGAAATGATCCAGACCAGCAAGACGGA
GATCACAGACCTGAGACGCACCCTGCAGGGGCTAGAGATTGAGCTGCAGT
CTCAGCTCAGCATGGTACGGTCACTCTGGCTTATTGGGCAACACATGAAC
CCATTGTCCATGGCTGGTAAAGCCTCAGCCCTCACTCCCAACAGTGGTTA
TTCTGGGCGGTCCGTCTCATCCTTCCTATCCCTCTACCTTCAGTGGCTTG
CCTCCTAGTCTGATGAGTCTATAAATCTGTTGCACTACCAGAAAGCCGGG
CTGGAGAACTCTCTGGCAGAGGTGGAGTGCCGCTATGCCACACAGCTGCA
GCAGATCCAGGGGGTCATTACCGGTCTGGAGACTCAGCTGAGTGAGCTCC
GCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_c13.g1 MSMg01no280_c13.g1 CHROMAT_FILE:
MSMg01no280_c13.g1 PHD_FILE: MSMg01no280_c13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:20:56 2005
         (292 letters)



>mm_chr11_99994600_99995290
          Length = 691

 Score =  513 bits (265), Expect = e-150
 Identities = 286/295 (96%), Gaps = 7/295 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagtcaactggctggccaggtcaatgtggaaatggacgcagcttctgcc---gtggac 57
           ||||||||||||||||||||||||||||||||||||||||||||  |  ||   ||||||
Sbjct: 491 agcagtcaactggctggccaggtcaatgtggaaatggacgcagc-ac--ccggggtggac 435

                                                                       
Query: 58  ctgacccgcatgctggcagagatgagggagcagtatgaagctattgcagagaaaaaccgt 117
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 ctgacccgcatgctggcagagatgagggagcagtatgaagctattgcagagaaaaaccgt 375

                                                                       
Query: 118 cgggatgtagaggcctggttcttcagtaaggtgggtctgaccccctcctcacacccccaa 177
           |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||
Sbjct: 374 cgggatgtagaggcctggttcttcagtaaggtgggtctgacctcctcctcaca-ccccaa 316

                                                                       
Query: 178 ctccagctctgctctacctctcctcccctctccagaagcctctgaggaggcccatgaggc 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ctccagctctgctctacctctcctcccctctccagaagcctctgaggaggcccatgaggc 256

                                                                  
Query: 238 tcatgtttcttatccgtgacttgcagactgaagagctgaacaaggaggtggcgtc 292
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 255 tcatgtttcttatccgtgacttgcagactgaagagctgaacaaggaggtggcgtc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 691
Length adjustment: 9
Effective length of query: 283
Effective length of database: 682
Effective search space:   193006
Effective search space used:   193006
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


| Home | SequenceCutter | Blast | Download |