Query= MSMg01no280_g05.b1 MSMg01no280_g05.b1 CHROMAT_FILE:
MSMg01no280_g05.b1 PHD_FILE: MSMg01no280_g05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:13 2005
(420 letters)
>mm_chr11_108380236_108381056
Length = 821
Score = 694 bits (359), Expect = 0.0
Identities = 406/427 (95%), Gaps = 12/427 (2%)
Strand = Plus / Minus
Query: 1 cagtg-tttcagcaccctagacagcatagtgtgttttgacgtctggtggattccagaaca 59
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 cagtgttttcagcaccctagacagcatagtgtgttttgacgtctggtggattccagaaca 434
Query: 60 ggatgaaggggctaatctcaaatggaaacaactggctgatgcatctttgccatgctgcac 119
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 433 ggatgaaggggctaatctcaaatggaaacaactggctgatgcatcgctgccatgctgcac 374
Query: 120 acttgtgcagatgtgcctacctactcgtacaataccttagaagttgaaagtgcatgctct 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 acttgtgcagatgtggctacctactcgtacaataccttagaagttgaaagtgcatgctct 314
Query: 180 tgtctcaggagatttatgtcagagtcatatttagtttttaataatttcacattttgttct 239
||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct: 313 tgtctcaggagatttatgtcagaatcatatttagtttttaataatttcacattttgctca 254
Query: 240 tagtcatttacaagatgttctttctctttatgtagtatgttgcgcctgaaaca-----cc 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tagtcatttacaagatgttctttctctttatgtagtatgttgcgcctgaaacagtaag-- 196
Query: 295 cccat-aaaaatattatatatttttggaaccaatctctaaaatggatatcaactaaacta 353
|| |||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct: 195 ---ataaaaaatattatatatttttggaaccaatctctaaaatggatagcaactgaacta 139
Query: 354 ataatcaactaaatttaaatatattctctttttatatatgaagtaagtatccgcattttc 413
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 138 ataatcaactaaatttaaatatattctcattttatatatgaagtaagtatccgcattttc 79
Query: 414 atcaact 420
|||||||
Sbjct: 78 atcaact 72
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 420
Length of database: 821
Length adjustment: 9
Effective length of query: 411
Effective length of database: 812
Effective search space: 333732
Effective search space used: 333732
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_g05.g1 MSMg01no280_g05.g1 CHROMAT_FILE:
MSMg01no280_g05.g1 PHD_FILE: MSMg01no280_g05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:13 2005
(234 letters)
>mm_chr11_108208049_108208679
Length = 631
Score = 408 bits (211), Expect = e-118
Identities = 227/233 (97%), Gaps = 5/233 (2%)
Strand = Plus / Plus
Query: 1 atcctgtcattatttgggctttttcaacttactatgtagaaagcatggaggaa-ggtaag 59
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct: 201 atcctgtcattatttgggctttttcaacttactatgtagaaagcatgg-ggaaaggtaag 259
Query: 60 atggcaaattagactatataatccggcagataattagatttacagtgactaggaagtctg 119
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 atggcaaattagactata--atccggcagataattagatttacagtgactaggaagtctg 317
Query: 120 gaaataaatagactagggtccaaatgacaaggggactataagggccaggggccattgtca 179
| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 318 gtaataaatagactagggtccaaatgacaaggggactataagggc-aggggccattgtca 376
Query: 180 gacaagctttgagagctggtgaatagaagtccccagcagagatgagtgccagg 232
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 gacaagctttgagagctggtgaatagaagtccccagcagagatgagtgccagg 429
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 631
Length adjustment: 9
Effective length of query: 225
Effective length of database: 622
Effective search space: 139950
Effective search space used: 139950
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
