BAC Information

Click to search

BAC

Clone NameMSMg01-280H04
Chromosome11 (Build37)
Map Location 15,431,751 - 15,432,081
singlet/doubletsinglet
Overlap genenone
Upstream gene1700046C09Rik, 1700054H16Rik, LOC100042542, LOC100041673, LOC432537
Downstream geneLOC665660, Vstm2, Sec61g, Akt2-ps
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-280H04.T7 (MSMg01no280_h04.b1)MSMg01-280H04.TJ (MSMg01no280_h04.g1)
ACCAG417538AG417539
length755750
length of high quality
(start - end)
627 (129 - 755)332 (389 - 720)
definitionCHROMAT_FILE: MSMg01no280_h04.b1 PHD_FILE: MSMg01no280_h04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:17 2005CHROMAT_FILE: MSMg01no280_h04.g1 PHD_FILE: MSMg01no280_h04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:21:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGAAATCTCACACAACAGGTGAAGGAGTTGAACAAAACCATCCAT
GATCTAAAATCTGAAGTATAAACCCTAAAGAAATCACAAAGGGAGACAAC
TGTNGGGAATAAAAAACCTAGAAAAGAAATCAGAAGCCACAGATACAAGC
ATCACAACAGAATACAAGAGATAGAAGAGATAATCTCAGGTGCAGAAGAT
TACAAGGAAAACATTGACACAACAATCAGGTAAAATGCAAAATACAAAAA
GATTCTAACTCAAAACATCCAGGAAATCTAGCACACAACAAGAGCAAACC
TAAGGATAGTAAGTATATATGAGAATGAAGATGTTGAACTTATATGGCTA
GCAAATATCTTCAACCAAATTATAGAAGAAAACTTCCCTAACCTGAAGAA
AAAAATGCCCATGAACATACAAGGAGCCTACAGAACTCCAAATAGTTTGA
ACCAGAAAAGAAATTCCTCTCATCACATAATAATCAAAACACCAAATGTA
GAAAACAAAGGAAGAATATTAAAAGCAGTAAGGGGAAAAGGTCAAGTAAC
GTATAAAGGTAGACCTATTAAAAATACACCAGACATCTAACCAGAGAATA
TGAAAGCCAGAAGATCCTGGAAGACATCGTACAGACCCTAAGAAAACACA
AATGCCAGCTCAGCCTACATAGATGGGAAAAGCAAAGTATTCCATGACAA
AAACT
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXACTTTTAAGACAACCTGGCCTTGA
ACTCAGAAATTCGCCTGCTTTTGCTTCACAAGAGATGGGATTAAAGGTAT
GCATCACTACCACCCGGAGACAATATGTATTTTTAAGTGTCAACTCTAGT
GAGAATGCATCAGATGTCATTGGAGTAGGAGACATGGTCCAAGTATGAAT
GAAAAGCAAAGAAGACATGAATCCACAGAAACTGAGTGTCAAGAAAGATT
TTCATGCAAACAAGAGAGCAGAAAGCATCAAGGAGCACACTGACTGCAAA
TTAAATATATTCTATTGTTTTTTTACCCCCCCCCCCCTGTGGTAATTCAG
TTGAGTAAGACTATCTGAANAATATACATATATAATATATAAGTATATAG
TATAGATATGTTCATGTATATTTATTATAGGTCTGCAAAGCTGATAGTAT
ATTAGACACTGCGAACATAGGATAAAATTCAGACAATTAGTAATGACAAT
TGTGTTCATTTAGTTATCCTAGTTAGATCTTTAGAAAATTTTTTATCACT
TTGAATATAATTGAATTGAAGGAGAATAGAAGAAATTTTAAGACTTAAAG
AAAGGATTAAATAATAGTATAAATCTTTAAAAATTATTGAATGATGTTTT
TTATAGCAAAATCTCAATGTCTTCAATACACACACCAGCACCATCAAAAA

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no280_h04.g1 MSMg01no280_h04.g1 CHROMAT_FILE:
MSMg01no280_h04.g1 PHD_FILE: MSMg01no280_h04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:17 2005
         (332 letters)



>mm_chr11_15431551_15432281
          Length = 731

 Score =  605 bits (313), Expect = e-177
 Identities = 327/332 (98%), Gaps = 1/332 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   gtggtaattcagttgagtaagactatctgaanaatatacatatataatatataagtatat 60
           ||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||
Sbjct: 201 gtggtaattcagttgagtaagactatctgaaaaatatacatatatactatataagtatat 260

                                                                       
Query: 61  agtatagatatgttcatgtatatttattataggtctgcaaagctgatagtatattagaca 120
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 261 agtatagatatgttcatgtatatttattataggtctgcaaaactgatagtatattagaca 320

                                                                       
Query: 121 ctgcgaacataggataaaattcagacaattagtaatgacaattgtgttcatttagttatc 180
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ctgagaacataggataaaattcagacaattagtaatgacaattgtgttcatttagttatc 380

                                                                       
Query: 181 ctagttagatctttagaaaattttttatcactttgaatataattgaattgaaggagaata 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagttagatctttagaaaattttt-atcactttgaatataattgaattgaaggagaata 439

                                                                       
Query: 241 gaagaaattttaagacttaaagaaaggattaaataatagtataaatctttaaaaattatt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gaagaaattttaagacttaaagaaaggattaaataatagtataaatctttaaaaattatt 499

                                           
Query: 301 gaatgatgttttttatagcaaaatctcaatgt 332
           ||||||||||||||||||||||||||||||||
Sbjct: 500 gaatgatgttttttatagcaaaatctcaatgt 531


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 332
Length of database: 731
Length adjustment: 9
Effective length of query: 323
Effective length of database: 722
Effective search space:   233206
Effective search space used:   233206
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)