Query= MSMg01no280_o19.b1 MSMg01no280_o19.b1 CHROMAT_FILE:
MSMg01no280_o19.b1 PHD_FILE: MSMg01no280_o19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:53 2005
(672 letters)
>mm_chr11_109755809_109756880
Length = 1072
Score = 1168 bits (604), Expect = 0.0
Identities = 651/668 (97%), Gaps = 4/668 (0%)
Strand = Plus / Plus
Query: 7 gaattctttcct--ggttccctctaggaaacacaactctactattgccttcattttgggc 64
|||||||||||| || || ||| |||||||||||||||||||||||||||||||||||
Sbjct: 207 gaattctttccttggg--ccttctgggaaacacaactctactattgccttcattttgggc 264
Query: 65 accccgcctcataactgcgactggatggatctgtgttgccctgagcttcttggttggaag 124
|||| |||||||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accctgcctcataactgtgaatggatggatctgtgttgccctgagcttcttggttggaag 324
Query: 125 aattttgttctagtcaacttgggaaatgaagcataatgttatacagatttcttgacccct 184
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aattttgttttagtcaacttgggaaatgaagcataatgttatacagatttcttgacccct 384
Query: 185 ttgaaaagaggaatggtatgaaattctgctgaaaggctgctgtgacccatagaacagaga 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttgaaaagaggaatggtatgaaattctgctgaaaggctgctgtgacccatagaacagaga 444
Query: 245 aagcacatggccctttaaacacaggacacatgtcatgttcttctcattactaaacacagt 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 aagcacatggccctttaaacacaggacacatgtcatgttcttctcattactaaacacagt 504
Query: 305 tttcctccttgagttgaaagcaaaattgactgtgataaatgactggggaaaggggaacat 364
||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||
Sbjct: 505 tttcctccttgagttgaaagcaaaattgattttgataaatgactggggaaaggggaacat 564
Query: 365 acatgtgcacacatatacacatggaatggtcacagctaatacacgagagatgcttctggt 424
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 565 acatgtgcacacatatacacatggaatggtcacagctaatacacaagagatgcttctggt 624
Query: 425 ggatcaggctggatactaatcatactaacttgcttgttacttatttatgagaaaataaaa 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ggatcaggctggatactaatcatactaacttgcttgttacttatttatgagaaaataaaa 684
Query: 485 tcctccattgaagatctggacatctgcagtggggtttggatccaaacttgtcagttttcc 544
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcctctattgaagatctggacatctgcagtggggtttggatccaaacttgtcagttttcc 744
Query: 545 agcaggaccccagtgttataggccagagcccttgggcttggtactgataaatgctaaaac 604
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 745 agcaggaccccagtgttataggccagagcacttgggcttggtactgataaatgctaaaac 804
Query: 605 atgaataatacctgtgcagagaaagcataactactctggaaatgcagtttagtatataaa 664
|||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 805 atgaataatatctgtgcagagaaagcaaaactactctggaaatgcagtttagtatataaa 864
Query: 665 atcttggc 672
||||||||
Sbjct: 865 atcttggc 872
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 37
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 672
Length of database: 1072
Length adjustment: 10
Effective length of query: 662
Effective length of database: 1062
Effective search space: 703044
Effective search space used: 703044
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no280_o19.g1 MSMg01no280_o19.g1 CHROMAT_FILE:
MSMg01no280_o19.g1 PHD_FILE: MSMg01no280_o19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:21:53 2005
(574 letters)
>mm_chr11_109912956_109913929
Length = 974
Score = 888 bits (459), Expect = 0.0
Identities = 486/495 (98%), Gaps = 1/495 (0%)
Strand = Plus / Minus
Query: 80 gctgaggatgtaatgggaagagaggcccttgatcctgtgaaggctctatgccccagtata 139
||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 974 gctgaggatgtaatggg-agagaggcccttggtcctgtgaaggctctatgccccagtata 916
Query: 140 ggggacttccagggccagaaaaaggaagtgggtgggttgacgagcaaggggagggggacg 199
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 915 ggggacttccagggccagaaaaaggaagtgggtgggttgacgagcaaggggagggggagg 856
Query: 200 gtatagggggttttggaggggaaactaggaaagaggataacatttgaaatgcaaataaag 259
| ||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||
Sbjct: 855 ggatagggggttttggaggagaaactaggaaaggggataacatttgaaatgcaaataaag 796
Query: 260 aaaatatctaataaaaaggaatcatttattaaaatcttcactttctaaacttagaagggg 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 aaaatatctaataaaaaggaatcatttattaaaatcttcactttctaaacttagaagggg 736
Query: 320 aatatatataacttatatgtatttattctagaacttctgttttgaatgtctcaattacat 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 aatatatataacttatatgtatttattctagaacttctgttttgaatgtctcaattacat 676
Query: 380 tactgtccaacaaatacttgattttcttcctgtaccaagtttgagatagttgaagaagaa 439
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 675 tactgtccaacaaatacttgattttcttcctgtaccaactttgagatagttgaagaagaa 616
Query: 440 aacacgcagattacacagtctgttctcccagtgaattaaacgggagtgaaacttctcccc 499
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 615 aacacgcagattacacagtctgttctcccagtgagttaaacgggaatgaaacttctcccc 556
Query: 500 ttatattttgtatttgaaattctggagggcttgatacacttcagcatcaaatgatgctgt 559
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ttatattttgtatttgaaattctggagggcttgatacacttcagcatcaaatgatgctgt 496
Query: 560 atttgtatctgacac 574
|||||||||||||||
Sbjct: 495 atttgtatctgacac 481
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 574
Length of database: 974
Length adjustment: 10
Effective length of query: 564
Effective length of database: 964
Effective search space: 543696
Effective search space used: 543696
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
