BAC Information

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BAC

Clone NameMSMg01-288E11
Chromosome11 (Build37)
Map Location 35,400,315 - 35,400,599
singlet/doubletsinglet
Overlap geneSlit3
Upstream geneDock2, Dock2, Ccdc99, LOC100038976, LOC100039006
Downstream genePank3, LOC666733, AI595406, Rars, Wwc1, LOC636532, Odz2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288E11.T7 (MSMg01no288_e11.b1)MSMg01-288E11.TJ (MSMg01no288_e11.g1)
ACCAG418146AG418147
length725731
length of high quality
(start - end)
318 (50 - 367)287 (79 - 365)
definitionCHROMAT_FILE: MSMg01no288_e11.b1 PHD_FILE: MSMg01no288_e11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:19 2005CHROMAT_FILE: MSMg01no288_e11.g1 PHD_FILE: MSMg01no288_e11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:19 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NCCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCTATGTACCCCAGGATGGATTTGAACTGACAGAGATCCAC
CTGCCTCTCCCAAATGCTGGCTTTACAGGCATGCATTTATGCATTTACTT
TTTTTTCAATTTTTTATTAGATATGTTCTTCATTTACATTTCAAATGCTA
TCCCGAAAGTCCCCTATACCCCCACCCCTGCTCCCCTACCCATCCACTCC
CACTTCTTGGCCCTGGCATTCTCCTGTACTGGGGCATATAAAGTTTACAA
GACCAAGGGGCCTCTCTTCTCAATGATGGCTGACTAGGCCATCTTCTGCT
ACATATGCAGCTAGATATCAAGCTCTGGCGCCACTGGTTAGTTCATATTG
TTGTTCTACCTAAACCCCCCCCCACCCCATCATCTCCTTGGGTACTTTCT
CTAGCTCCTCCATTGGGGGCCCTGTGTTCCATCCAATAGATGACTGTGAG
CATCTACTTCTGTATTTACCAGGCACTGGCCTAGCCTCACAAGAGACAGC
TATGTCAGGGATGCATTTACTTTTAAGTTTTACATTTTAAAGCTTATTCT
CTGATAGAGATAGAGAGAGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGA
GAGAGACATCTCCTTTTTTTGTGTTTTTGTATACGCCCACAGCCTCCTAT
TGTTACTTGTCCCTTTTCTCAACCT
NAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXAATTCTGTGGTGGGCTGCCTTG
AGCTCTGTCAACAGAGTCTTAAAGTCCTTGAGGTCGGTGTCACATCCTGC
TCCTCCCTTAGTATTTGCCTAAGCAGAGTCTGGCTGATTGTAAACTGCAC
AGAGATAACAGAACTCGTATCCAGCATTGCTTCACATAGATAGGCTTGTA
GACATGAGTTCCCCTGCAAAAAAGAAAAAAAGGGTCACTATCCTGGTGGA
CAGTGGTTCTCTCCAAAGGCAGAAAACTATAAAGTCCCTTTCCTGCGTGG
CAGGTGACTCACAGTTTTTCTTGCACACGCTCCCCGGTGCCCCAGAGATC
CATGGAGCTGTTGCCTTGGCTCCCCCACTCCCCAGCTGAATTCTCTACTC
AGTCAGAAAAAGGAGAATGTCCTTGGAAAGTCTGTCAAGGCATCCTCTGC
GGGTGACTGTATCCAGTAGCCCATGATCCCACATCCCAATGGCAAGCTTT
GGTGACTCACCACCAGTCAGTCAGCCAACTGGGCCTCCGTCCAGCCTGTC
TATGACTGCAGTCCCGGGAAAGTGCCCTCCCCACCCCCTCCAACAGGGCA
CAAAGGCATTGCTAACAGACTGTGGCAGTCTCATTTGTAAACCGTGTTCA
TCCAGCAGCCAAGAAAGATCAGCCCTGATGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_e11.g1 MSMg01no288_e11.g1 CHROMAT_FILE:
MSMg01no288_e11.g1 PHD_FILE: MSMg01no288_e11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:19 2005
         (287 letters)



>mm_chr11_35400115_35400800
          Length = 686

 Score =  455 bits (235), Expect = e-132
 Identities = 274/287 (95%), Gaps = 3/287 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aattctgtggtgggctgccttgagctctgtcaacagagtcttaaagtccttgaggtcggt 60
           |||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 aattctctggtgggctgccttgagctctgtcaacagagtcgtaaagtccttgaggtcggt 260

                                                                       
Query: 61  gtcacatcctgctcctcccttagtatttgcctaagcagagtctggctgattgtaaactgc 120
           ||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct: 261 gtcacatcctgctcctcccttagtatttgcccaagcggagtctggctgattgtaaactgc 320

                                                                       
Query: 121 acagagataacagaactcgtatccagcattgcttcacatagataggcttgtagacatgag 180
           |||||||||| |||||||||||||| | |||||||||||||| |||||||||||||||||
Sbjct: 321 acagagataatagaactcgtatccatcgttgcttcacatagacaggcttgtagacatgag 380

                                                                       
Query: 181 ttcccctgcaaaaaagaaaaaaagggtcactatcctggtggacagtggttctctccaaag 240
           ||||||||||||||||| |||| ||| |||||||||||||||||||||||||||||||||
Sbjct: 381 ttcccctgcaaaaaagacaaaa-gggccactatcctggtggacagtggttctctccaaag 439

                                                          
Query: 241 gcagaaaact-ataaagtccctttcctgcgtggcaggtgactcacag 286
           |||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcagaaaa-tgataaagtccctttcctgcgtggcaggtgactcacag 485


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 686
Length adjustment: 9
Effective length of query: 278
Effective length of database: 677
Effective search space:   188206
Effective search space used:   188206
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)