BAC Information

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BAC

Clone NameMSMg01-288H02
Chromosome11 (Build37)
Map Location 32,821,663 - 33,002,545
singlet/doubletdoublet
Overlap geneLOC670035, LOC432548
Upstream geneCpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620
Downstream geneFgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1, Kcnmb1, Lcp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288H02.T7 (MSMg01no288_h02.b1)MSMg01-288H02.TJ (MSMg01no288_h02.g1)
ACCAG418268AG418269
length759757
length of high quality
(start - end)
288 (439 - 726)660 (72 - 731)
definitionCHROMAT_FILE: MSMg01no288_h02.b1 PHD_FILE: MSMg01no288_h02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:31 2005CHROMAT_FILE: MSMg01no288_h02.g1 PHD_FILE: MSMg01no288_h02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:22:31 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,821,663 - 32,821,950)(33,002,266 - 33,002,545)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTCTGCTTTATTTCCTTGACCCTGTACTTACGGGGTCTGGATAACTTC
ACAAACATCAGGAGTACGTTGGCCCCTAGACATAGGACAGCGCCCTCCTC
TGGCTTGCTGCTCACTTGCTGTCTCCAGTATGTGCTATGTTTTCTCAGCC
AGCTCCGTCCATCTCTTTCCCTGTGATCTTTTCTGACACTTCTAAGTTTA
ACCAACCTATTCTCCCACGAGGGCTGATAAATATTCAAGTCTTTTCTCTC
CAACTTTTTTTTTTAAATCTCATTCTCTTGGGCATCTGGAATACATTTCA
GAGCAAGTTGGCATGTTTGTGCATGCCTACAGCCTGAGAGGAGGGGCCTC
GTTTGCACTTCTAAGTCATCTGGTCTGTTCTGGACCTCTACCCTTTTCAA
GCCAGAGACCTGGGCACCTGGACAGCGTAGGGGCTAAGGTTCTTTCTCTG
CCCACTATAGAGTTGCTACTGTAGCTGTGCAGAGTCGTCAAGCTAAGTGT
TCTAGAATTCTCTGTGCTTGGTATAGATTGGGCCAGGGAAATTGACTATC
GGACATCCCCCTGAGACAACAATTATCCCCATTTGATAGATGAAGAAACT
GAGGCTTAAGCAACTTATCCAAAGTCACATTCTAGAATAGTAATGATTTC
TTCCTGGGGCCTCATTTTCTCTGGTTATTCAGAAACTTGCCTTCTTTCTC
GCTGCTAAT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXAGCAGGGTCTCCTCCATCCACCAGGGACT
TGAGGACACAGACAGTGTTAGTGCGACGACGCAGAAACATCTGTGATAAA
GTAGGTGTTAGGAATTGCCTCTTTATTCTGAGCTTGAACAACAGGGCCAG
AAGCCACCACTTTCGTCCCATGAGCCTCACTGCTCAAGGTTCAGGCTTGA
GTATAGGGGGAGCAGTCGAGGAATGGCATAATAGAAAGTGTGTAATGGGG
ACAAGGTAACCCCAGGAGGAAGTGGGGACGCTGCTGGAATGGGGAATGAT
GATGGATGTCGGCTGTATTTCAGGATGCTCCAGGAGCTAACCAGGCTCTG
GCTATATAGTTGGGTGCTGCTAAATACTAGAGTTGCTGAGAATTCTAAAC
TGGCTTCTATTAAGTAGACATTCGGTTTTTGTCCTCCAGGTTTTTCTGGC
TTATTTAACCCCATCTTCTGTGCCTGTTTGTAAACATTATAGGGAGAAAA
TAAAGACGGCAAGAAGGGCTAATCTTTATCCTAACCCTGAGGAGTATAAA
TGCCTGTTGTGGGCTCTACCCCTGCCCATGGCAGACATGACTGATCGATC
CCAGTATTGTTTCCCATGGAGTCCTGATAAAACCTCTGCAGTCCCACTGC
CCGGCAGGCGGCCACAGCAATGGATCAGAGTTTGCACACGTTGTGATGCC
TATCAGC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_h02.b1 MSMg01no288_h02.b1 CHROMAT_FILE:
MSMg01no288_h02.b1 PHD_FILE: MSMg01no288_h02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:31 2005
         (288 letters)



>mm_chr11_32821463_32822150
          Length = 688

 Score =  487 bits (252), Expect = e-142
 Identities = 279/288 (96%)
 Strand = Plus / Plus

                                                                       
Query: 1   tacccttttcaagccagagacctgggcacctggacagcgtaggggctaaggttctttctc 60
           |||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||
Sbjct: 201 tacccttttcaagccagagacctgggcacctggacagcataggggctaaggtcctttctc 260

                                                                       
Query: 61  tgcccactatagagttgctactgtagctgtgcagagtcgtcaagctaagtgttctagaat 120
           ||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgcccaccacagagttgctactgtagctgtgcagagtcgtcaagctaagtgttctagaat 320

                                                                       
Query: 121 tctctgtgcttggtatagattgggccagggaaattgactatcggacatccccctgagaca 180
           ||||||||||||||| |||||||||||||||||||||||||||||||||||| ||| |||
Sbjct: 321 tctctgtgcttggtacagattgggccagggaaattgactatcggacatccccatgaaaca 380

                                                                       
Query: 181 acaattatccccatttgatagatgaagaaactgaggcttaagcaacttatccaaagtcac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acaattatccccatttgatagatgaagaaactgaggcttaagcaacttatccaaagtcac 440

                                                           
Query: 241 attctagaatagtaatgatttcttcctggggcctcattttctctggtt 288
           || ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 atactagaatagtaatgatttcttcctggggcttcattttctctggtt 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no288_h02.g1 MSMg01no288_h02.g1 CHROMAT_FILE:
MSMg01no288_h02.g1 PHD_FILE: MSMg01no288_h02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:22:31 2005
         (660 letters)



>mm_chr11_33002066_33003125
          Length = 1060

 Score =  449 bits (232), Expect = e-130
 Identities = 268/280 (95%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagggtctcctccatccaccagggacttgaggacacagacagtgttagtgcgacgacg 60
           ||||||||||||||||||||||||||||||||||||||||||||||  |||| || ||||
Sbjct: 480 agcagggtctcctccatccaccagggacttgaggacacagacagtggcagtgtgatgacg 421

                                                                       
Query: 61  cagaaacatctgtgataaagtaggtgttaggaattgcctctttattctgagcttgaacaa 120
           |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct: 420 cagaaatatctgtgataaagtaggtgttgggaattgcctctttattctgagcttgaataa 361

                                                                       
Query: 121 cagggccagaagccaccactttcgtcccatgagcctcactgctcaaggttcaggcttgag 180
           ||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 360 cagggccagaagccatcactttcgtcccatgagcttcactgctcaaggttcaggcttgag 301

                                                                       
Query: 181 tatagggggagcagtcgaggaatggcataatagaaagtgtgtaatggggacaaggtaacc 240
           |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 tatagggggagcaggcgagaaatggcataatagaaagtgtgtaatggggacaaggtaacc 241

                                                   
Query: 241 ccaggaggaagtggggacgctgctggaatggggaatgatg 280
           ||||||||||||||||||||||||||||||| ||||||||
Sbjct: 240 ccaggaggaagtggggacgctgctggaatggagaatgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 660
Length of database: 1060
Length adjustment: 10
Effective length of query: 650
Effective length of database: 1050
Effective search space:   682500
Effective search space used:   682500
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)