BAC Information

Click to search

BAC

Clone NameMSMg01-288N19
Chromosome11 (Build37)
Map Location 16,881,297 - 16,881,584
singlet/doubletsinglet
Overlap genePlek
Upstream geneLOC665660, Vstm2, Sec61g, Akt2-ps, LOC665689, LOC627583, Egfr, 2810442I21Rik, A630050E13Rik
Downstream gene1500041B16Rik, LOC100042644, Ppp3r1, Pno1, AI553587, C1d, LOC382486, EG665748, Etaa1, LOC327871
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-288N19.T7 (MSMg01no288_n19.b1)MSMg01-288N19.TJ (MSMg01no288_n19.g1)
ACCAG418571AG418572
length731734
length of high quality
(start - end)
239 (133 - 371)285 (83 - 367)
definitionCHROMAT_FILE: MSMg01no288_n19.b1 PHD_FILE: MSMg01no288_n19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:03 2005CHROMAT_FILE: MSMg01no288_n19.g1 PHD_FILE: MSMg01no288_n19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:03 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NNAAATATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCCAGAGAA
TCCGCGGAATTCTCAGAAGTTTCTGTAGAGGGGCCAAGAATGTATCTCAG
AGGGTCAGGAACTGAACTAGTAAGTATGAACTCTTGGGTTCCATTCCCAA
CATTACATGAAATGGGGCACATGACAGTGCATACTTGTAGTCCAGTCACC
CTGGGGGTGGAAGCAGACGGTTCACTCGTGTAATGTTATCCTCAGCTACA
TATTTAGCTAGAGACCAGCCTGAGCTATATGAGACCTCTTGGGAACCAAG
CTGACTCAGAATTTTCTCAGAGGTCCCATTGAAAGTACCAAAGTAATCTA
GATCTGTGTCCTTGACTGTGTTTAACTTGGCAAGGCCCAATCTGGGGCTG
GGGCCAGAGCCACCAACGGAGTTAACGCTTTAGTTTTTAGGAACTTGTCT
CCCCCTACTCTTACCTGAAGAGACCAGAGTTTTCAGCCTCAAGACTGTGT
GTGCTCAGTCAGGTACACTTGAGACATTCTTTGTCCCCATTGTTTAATTG
ATTAGCTTCCTTACTATGTCATCATATTTTATGATGGCTTTCTGGTGACT
GTCCCATAACTTCCACCCCAAATAACATATAAGAGGCTGTATTTCTTAAT
AAACTAGCTTATCATAAGCCATCTGCTTGCACAAGATGCCTGGCCCCAAC
AATCCTGTATTCTTTGTTTTTTTTCATCCTN
NNAACTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTAGTACTCTCAGCACAC
TTCAGCAACAGTTTCAAAGTCAGGTGATGCCCAAAAGAGACCAGGCATAT
GTGATGAGAGGCAAGAGCCTACTACCTGACCAAAAACAAGACACCAGCAG
GACAGCTGGAGACAGTTCGCTTCCGTGGGGATTATAATCACGGAGCATTA
TGTACTTATTTGCTATTTGACTTTTTTTCCAACCTACAGAGGACCTCAGA
GATATCCTAGTCCATGCCTTCATTTTCCACTATAGTCCTGAAGGCCTGGA
AAGGCTATGTAGCCTACTTTTCTTTTTTCACCCCCCCCCCTCATGGACAT
AGAGAGGGTGGAGGGACCAGAGTGACCGCAGGGACACAAACAGTAGTATG
TGGCATATGCAAGCAAACACCTTCAGCTCCTAGGTTCTTTTTGGTTGAAT
TACCATAGACTTGGACAAGTCATTCACTGAGCTTATCTACACATGGGCTT
TCCTCAGGAGGCAATGAGGACTTGAACATTGTCCTTACTTCCCAGTCCGT
GAGGCCACCTGGATGGCTTTGATCCACTCAGTACGCTCCTTGGAAGTGGC
TGCCTGCAAGTAATAATGAACTTCATCTGCTGTGATGATCTCAAAGAGGT
TCTCTTCATCACTCTTCTTACCTGGTAAGAGAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no288_n19.g1 MSMg01no288_n19.g1 CHROMAT_FILE:
MSMg01no288_n19.g1 PHD_FILE: MSMg01no288_n19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:03 2005
         (285 letters)



>mm_chr11_16881097_16881784
          Length = 688

 Score =  464 bits (240), Expect = e-135
 Identities = 275/288 (95%), Gaps = 3/288 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttagtactctcagcacacttcagcaacagtttcaaagtcaggtgatgcccaaaagagacc 60
           ||||| ||||||||||||||||||||||||||||||| ||||||||| | ||||||||||
Sbjct: 201 ttagtgctctcagcacacttcagcaacagtttcaaagacaggtgatgtctaaaagagacc 260

                                                                       
Query: 61  aggcatatgtgatgagaggcaagagcctactacctgaccaaaaacaagacaccagcagga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcatatgtgatgagaggcaagagcctactacctgaccaaaaacaagacaccagcagga 320

                                                                       
Query: 121 cagctggagacagttcgcttccgtggggattataatcacggagcattatgtacttatttg 180
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 cagctggagacagttcgcttccgtggggattataatcacagagcattatgtacttatttg 380

                                                                       
Query: 181 ctatttgacttttttt---ccaacctacagaggacctcagagatatcctagtccatgcct 237
           || |||||||||||||   |||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgtttgacttttttttttccaacctacagaggacctcagagatatcctagtccatgcct 440

                                                           
Query: 238 tcattttccactatagtcctgaaggcctggaaaggctatgtagcctac 285
           |  |||||||| | ||||||||||||||||||||||||||||||||||
Sbjct: 441 ttgttttccacaagagtcctgaaggcctggaaaggctatgtagcctac 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 688
Length adjustment: 9
Effective length of query: 276
Effective length of database: 679
Effective search space:   187404
Effective search space used:   187404
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)