BAC Information

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BAC

Clone NameMSMg01-289C23
Chromosome11 (Build37)
Map Location 52,316,825 - 52,317,054
singlet/doubletsinglet
Overlap genenone
Upstream geneCol23a1, Agxt2l2, Hnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667
Downstream geneLOC100040523, Fstl4, LOC623205, Hspa4, Zcchc10, Aff4, LOC100040576, Leap2, Uqcrq, Gdf9, Shroom1, ENSMUSG00000049427, Ankrd43, LOC546500
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289C23.T7 (MSMg01no289_c23.b1)MSMg01-289C23.TJ (MSMg01no289_c23.g1)
ACCAG418807AG418808
length750743
length of high quality
(start - end)
234 (131 - 364)45 (77 - 121)
definitionCHROMAT_FILE: MSMg01no289_c23.b1 PHD_FILE: MSMg01no289_c23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:27 2005CHROMAT_FILE: MSMg01no289_c23.g1 PHD_FILE: MSMg01no289_c23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:27 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAATCCGCGGAATTC
AAGGCCAGTTTTCTCAACACTGAGTTCCAGTTAAGCCAGGGCTATATAAT
GAGCCTCTATGTCTATTTCTGCATAGAAAAATCTCTCTGTTCTCTGTCTG
TCAGTCTCTCTGTCTGTCTGTCTCACACACACACACACACACACACACAC
ACACACACACACACACACACACAAAGCTTCATTTACCAGGAAGGTCCTGG
ACATAGCAAGCCTGAATTCTTCACTGTGAACGTGCCCACCCAGCAACGCA
TATTGCCCAACATTGCATGGACATTTTTGTGCAGCCAGACAACAACAGGA
CTGGTCTCACTCCTTCTCTGCCTGCACGCTCATCCCACAAAAGCTCACAG
GGGCAGTCAGCACNACTGCTCTCCAAATACAGATGCAACACCTCAGCCAG
GAACAGAGAGGTTAATAAAAACAGGGCGAGGGTTCCCAAGGGACAGTTCT
TGGCCGCCTCTGAAGTTTACAAAGGCATGGCTTCTGATGCCTCAAAGGCG
CCTGTCGAGGCCAGGGTGAATTATTACACTGCAGGTTAGCAGGACACTTT
GTCTGCAGTGCCTTGGGAGTTGGCGTAATTGTATTTTATCTGTTTGCCAG
GAGTTTTCAGTACACTCTCTTAACGTACTTTAAACCTCAACAGCCCCATA
TAGCAATGCGAGCCTTTCTAGTTTATGCACCGATCACTGAATAAATACTA

NCCCGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAAAACAGCTACATAGTGAGATTG
AGCCTGTCTCAATAACAACAAATATAGCCTAAATGAAGGAGNGAGGAGGA
GGAGGAGAAGATAATTAGAGTGGGTATGATAGAATGNGNNNNNNNNNNNN
GNTGNNNNNNNNTTNNNNNNNNNNGNGNNNTNNNNNGTNNANNNGGGGGT
GTTTTTGTNTCGTTTTTTTATGGGGTTTTTTTTGAATTTGTTTGGATTGA
AGATCATTGGATAAAAAGGGGAAAAGGGGAAATAATTAAATTTTTTTTTT
TTTTTTTTTTTGGACAGGATAAGTGGGAGTAATTTCTATGGGGGGTTTTT
TGGTGGGGTTTTCCCCCCCCCCCCCCCCCCCCTTTTTTTTTATTGTCTTT
TCTTTTGTTTTTGGTGTTTGGTGGTTTTTGTCCCCCCGCCCTTTTCNNNA
AAAAAAATAAAAAAAAAAAAATTCTCATTTTTTCCTCTCCTCTTTCTGGT
TTTGTGGGGGGGGGCTGTTTTTGTCCCTTCTTTCTCCTTTTTTTCCCTTT
TTCCTCTTTTTCACTTTTGTGCCGTCGTTTTTCCTCCTTTCTTCTTCTTT
TTATTTTTTTTACCTCTCTTTTCATTCTTCCTCTTTTCCCTCTTTTTTTG
TTTCCCTTCTCTTTCTTTTTCCCTTTTTTCTTCTCTTTTTCCG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_c23.b1 MSMg01no289_c23.b1 CHROMAT_FILE:
MSMg01no289_c23.b1 PHD_FILE: MSMg01no289_c23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:27 2005
         (234 letters)



>mm_chr11_52316532_52317165
          Length = 634

 Score =  337 bits (174), Expect = 5e-97
 Identities = 217/232 (93%), Gaps = 3/232 (1%)
 Strand = Plus / Minus

                                                                       
Query: 4   tctctgt-tctctgtctgtcagtctctctgtctgtctgtctcacacacacacacacacac 62
           ||||||| | |||||||||| |||||||  ||| ||| |||| | | | |||||||||||
Sbjct: 523 tctctgtctgtctgtctgtctgtctctc--tctctctctctctctctctcacacacacac 466

                                                                       
Query: 63  acacacacacacacacacacacacacacacaaagcttcatttaccaggaaggtcctggac 122
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 465 acacacacacacacacacacacacacacacaaagcttcatttaccaggaagatcctggac 406

                                                                       
Query: 123 atagcaagcctgaattcttcactgtgaacgtgcccacccagcaacgcatattgcccaaca 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 atagcaagcctgaattcttcactgtgaacgtgcccacccagcaacgcatattgcccaaca 346

                                                               
Query: 183 ttgcatggacatttttgtgcagccagacaacaacaggactggtctcactcct 234
           ||||||||||| ||  ||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttgcatggacagttgggtgcagccagacaacaacaggactggtctcactcct 294


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 56
Number of extensions: 20
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 15
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)