BAC Information

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BAC

Clone NameMSMg01-289J02
Chromosome11 (Build37)
Map Location 41,156,419 - 41,156,708
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039241, LOC382508, LOC432549, Mat2b, Hmmr, Nudcd2, Ccng1, LOC100039256
Downstream geneLOC100039285, Hspd1, LOC100039292, Gabrg2, Gabra1, Gabra6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-289J02.T7 (MSMg01no289_j02.b1)MSMg01-289J02.TJ (MSMg01no289_j02.g1)
ACCAG419085AG419086
length730725
length of high quality
(start - end)
320 (47 - 366)290 (73 - 362)
definitionCHROMAT_FILE: MSMg01no289_j02.b1 PHD_FILE: MSMg01no289_j02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:54 2005CHROMAT_FILE: MSMg01no289_j02.g1 PHD_FILE: MSMg01no289_j02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:23:54 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCTCACCTGAGGAATACCGAATGGCAGAGAATCACCTGAAAAAATG
TTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGC
AGATGCTGGCGTGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGAGGATCCAACAATACCTCTCCTGGGC
ATATATCCAGAAGATGCCTCATCGGGTAACAAGGACACATGCTCCACTAT
GTTCATAGCAGCCTTATTTACCACATCCAGAAGCTGGAAAGAACCCAGAT
GCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACACAATG
GAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGCAA
ATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAAA
GGAACTCACACAATATGTACTCACTCGAAAGTGGATATTAGCCCCAAACC
TAGGATTCCCAAGATATAAGGTACAATTGGCTATACACATGAAACTCAAG
AAGAATGAAGACTGAAGGGTGTACACTATG
AATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTCTTAGTGACATCGGTAGTGATAAGA
TAAAATTTAATCGCATGAATACCTTTCTAAAACTCAACAGAAAATTTAGA
GGAAAAAATTATCTGGTGATGATTTGAAACTTAAGCTATGTATAATATTT
TGGAATTATATTTGGGTAGTTGACATTATAATATATAATTAGTATCTAAT
ATAATATTAATAATTGTATATTTAAGCTATGGATGGGTCTTTTGGAAAGT
ACATGTGTGGCTAAACAATTATGAATACATAAGATTTCAATAAGTCATTT
GTTATAGATTATAATATGACACGATCGATTAATGTCTGATCAAATATCTT
CTGCATTTTGTATCACACCGAAATCTGACTTATATGCACTCTACCACTAA
TCACAGTCTTATTCTATATCTACTGCATAATAAACTTAAGATGGTTTCTA
AGTCTTTTAGTAAAACAGTTAACTCTCTTAATGTGTTCTACAAAAAAAGA
AAAGATATCTTAGGTATATGCCACATATATTAAAAGAAATTAATATTATA
GATATTGTTAAGTCACATTAAGATATTCTAAAACATAGAAGGCTCTACAG
GTCAAATACAGATTACTTCCTTAATAGTGCAAAATAACTGGTCAAAGCAC
ATGGTTCCTTTATTCATAGTGATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no289_j02.g1 MSMg01no289_j02.g1 CHROMAT_FILE:
MSMg01no289_j02.g1 PHD_FILE: MSMg01no289_j02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:23:54 2005
         (290 letters)



>mm_chr11_41156356_41157046
          Length = 691

 Score =  522 bits (270), Expect = e-153
 Identities = 285/290 (98%), Gaps = 1/290 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttcttagtgacatcggtagtgataagataaaatttaatcgcatgaatacctttctaaaa 60
           |||||||||||||||||||||||||||||||| ||||||||||||||||  |||||||||
Sbjct: 353 tttcttagtgacatcggtagtgataagataaattttaatcgcatgaataaatttctaaaa 294

                                                                       
Query: 61  ctcaacagaaaatttagagg-aaaaaattatctggtgatgatttgaaacttaagctatgt 119
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 293 ctcaacagaaaatttagaggaaaaaaattatctggtgatgatttgaaacttaagctatgt 234

                                                                       
Query: 120 ataatattttggaattatatttgggtagttgacattataatatataattagtatctaata 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 233 ataatattttggaattatatttgggtagttgacattataatatataattagtatctaata 174

                                                                       
Query: 180 taatattaataattgtatatttaagctatggatgggtcttttggaaagtacatgtgtggc 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 173 taatattaataattgtatatttaagctatggatgggtcttttggaaagtacatgtgtggc 114

                                                             
Query: 240 taaacaattatgaatacataagatttcaataagtcatttgttatagatta 289
           |||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 113 taaacaattaggaatacataagatttcaataagtcatttgttatagatta 64


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 290
Length of database: 691
Length adjustment: 9
Effective length of query: 281
Effective length of database: 682
Effective search space:   191642
Effective search space used:   191642
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)