BAC Information

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BAC

Clone NameMSMg01-290D06
Chromosome11 (Build37)
Map Location 73,080,414 - 73,109,214
singlet/doubletdoublet
Overlap geneTrpv3
Upstream geneFbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3, P2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5, Tmem93, Tax1bp3, Ctns, Carkl, Trpv1
Downstream geneAspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290D06.T7 (MSMg01no290_d06.b1)MSMg01-290D06.TJ (MSMg01no290_d06.g1)
ACCAG419548AG419549
length735737
length of high quality
(start - end)		688 (43 - 730)323 (56 - 378)
definitionCHROMAT_FILE: MSMg01no290_d06.b1 PHD_FILE: MSMg01no290_d06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:40 2005CHROMAT_FILE: MSMg01no290_d06.g1 PHD_FILE: MSMg01no290_d06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:24:41 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(73,080,414 - 73,081,097)(73,108,892 - 73,109,214)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCACTCTAGGCCTTGTTCTATCTCTCCTCAGTTGCACCCTCATTTATGCT
CTACCTTCCAATACAGGTTCGTATGATTGACAGGTGAGGAAACCCAGGCT
TGGGACAAATGACTTGCCAAAGATCACAGAGGCAGGAAGTGGCGAGGTTG
TCACACACAAATACCCATGATACATGTTATCTGTTGGGAAACATTGGACT
TCCTCTGTTTCTGAGGGATTTGGTCCCAAGAACTATTTTTGAAAGATGGA
GGTCAAGTCTTACAACTGGCCACCAGGATAGCCTTTGGTTGTAGTCTTGA
TTACGTATGTAGCTTCTATACCTCCATCTTGTCTCTGCATGACAGCCTTG
ATCAGTAAGTTCCCTGTAATGGGTCCCATTTCCCAAGTGAGGAGACTGAT
GCTATTAATACCCTCTGAGGATCAAATGTATGAGGGAAGGGCTGGGACTA
TAGCTTTGTGCCACAACAAGCACCTTTCCTGCCTTTTCTCCTATGGGGTG
AGGCTGTTCTGTGGGTGTGGAGGTGACTCACGCAGGACACGTGGGTGGTG
GGTGTGGCCTGCCTGATGCCGAGGGCAGGTGGCCCAGCCAGTTTTGCCTC
TGATGCCTCATTCCAGCTGTCAGCTATCTCTGTGCCTACGATGAGAGCCT
CTGGCCACCTCAGCCACCTTCCCGACGGTGGGTTN

ATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCCTTACGTCTCTTCAACCTGAAGTCCCTTCTAAATGCCCACACAT
CACAGGTGACAATGAATAGAGCGCCCCCAGAAGCCTGTGTCTCCCCTCTA
TGTGTTGCTCTTCTCGACCCTGTTCTCAGAGAACCTACATTAAGGCTTAA
GCAGAGTCTCAGGACGCACCGCAGCCCCACTGGTGCTGTGCAAAACCTCA
CGATGTCGAGCTGAACAAAGTCCCTAACAAGGCCTCTACCCAGCTCACCT
GCAAGCGCCAGATCCGCTCACTTTCTTTGGAGACGTTCTCCACCGTCTCC
CCCATCAGGGCAATGAGCATGTTGAGGACGAGGACGAAGGTGAGGATGAC
ATAGGTGATGAGTAGGAAGAGAAAGAGGATGGGGTAGGTGGAGTTCTGCT
GGATGTTCAGGTCGCCCAGGCCTATGGTGAGCTTGAAGAGCTCCAGCACC
GCATCGCTGAAGCTGCCATAGGAACTGCAGTCCTTTTTGTCCTTGGAGCA
CTTCTCAATCAGTGAGGCCAGCGCTGTGGGGACAATGGGTGCTCTCGGGC
AATGCTGTCTGGCCACCCAGAGAACTCGCGTGTTTGCATGTGTACACACT
GCTACCTCCCTCCCTCCCTCCCTCCGGCCTCTCAGTTCCCATCTCTGCTC
TTCTTCCTCTCCAGTGTCAGGTTCCCCGGAAGCCTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_d06.b1 MSMg01no290_d06.b1 CHROMAT_FILE:
MSMg01no290_d06.b1 PHD_FILE: MSMg01no290_d06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:40 2005
         (688 letters)



>mm_chr11_73080210_73081297
          Length = 1088

 Score = 1315 bits (680), Expect = 0.0
 Identities = 683/684 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcactctaggccttgttctatctctcctcagttgcaccctcatttatgctctacct 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcactctaggccttgttctatctctcctcagttgcaccctcatttatgctctacct 264

                                                                       
Query: 65  tccaatacaggttcgtatgattgacaggtgaggaaacccaggcttgggacaaatgacttg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tccaatacaggttcgtatgattgacaggtgaggaaacccaggcttgggacaaatgacttg 324

                                                                       
Query: 125 ccaaagatcacagaggcaggaagtggcgaggttgtcacacacaaatacccatgatacatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ccaaagatcacagaggcaggaagtggcgaggttgtcacacacaaatacccatgatacatg 384

                                                                       
Query: 185 ttatctgttgggaaacattggacttcctctgtttctgagggatttggtcccaagaactat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ttatctgttgggaaacattggacttcctctgtttctgagggatttggtcccaagaactat 444

                                                                       
Query: 245 ttttgaaagatggaggtcaagtcttacaactggccaccaggatagcctttggttgtagtc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttgaaagatggaggtcaagtcttacaactggccaccaggatagcctttggttgtagtc 504

                                                                       
Query: 305 ttgattacgtatgtagcttctatacctccatcttgtctctgcatgacagccttgatcagt 364
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 505 ttgattacgtatgtagcttctatacctccatcttgtctctccatgacagccttgatcagt 564

                                                                       
Query: 365 aagttccctgtaatgggtcccatttcccaagtgaggagactgatgctattaataccctct 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aagttccctgtaatgggtcccatttcccaagtgaggagactgatgctattaataccctct 624

                                                                       
Query: 425 gaggatcaaatgtatgagggaagggctgggactatagctttgtgccacaacaagcacctt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gaggatcaaatgtatgagggaagggctgggactatagctttgtgccacaacaagcacctt 684

                                                                       
Query: 485 tcctgccttttctcctatggggtgaggctgttctgtgggtgtggaggtgactcacgcagg 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 tcctgccttttctcctatggggtgaggctgttctgtgggtgtggaggtgactcacgcagg 744

                                                                       
Query: 545 acacgtgggtggtgggtgtggcctgcctgatgccgagggcaggtggcccagccagttttg 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 acacgtgggtggtgggtgtggcctgcctgatgccgagggcaggtggcccagccagttttg 804

                                                                       
Query: 605 cctctgatgcctcattccagctgtcagctatctctgtgcctacgatgagagcctctggcc 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 cctctgatgcctcattccagctgtcagctatctctgtgcctacgatgagagcctctggcc 864

                                   
Query: 665 acctcagccaccttcccgacggtg 688
           ||||||||||||||||||||||||
Sbjct: 865 acctcagccaccttcccgacggtg 888


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 688
Length of database: 1088
Length adjustment: 10
Effective length of query: 678
Effective length of database: 1078
Effective search space:   730884
Effective search space used:   730884
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no290_d06.g1 MSMg01no290_d06.g1 CHROMAT_FILE:
MSMg01no290_d06.g1 PHD_FILE: MSMg01no290_d06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:41 2005
         (323 letters)



>mm_chr11_73108692_73109414
          Length = 723

 Score =  571 bits (295), Expect = e-167
 Identities = 316/323 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ccttacgtctcttcaacctgaagtcccttctaaatgcccacacatcacaggtgacaatga 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 523 ccttacgtctcttcaacctgaagtcccttctcaatgcccacacatcacaggtgacaatga 464

                                                                       
Query: 61  atagagcgcccccagaagcctgtgtctcccctctatgtgttgctcttctcgaccctgttc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 463 atagagtgcccccagaagcctgtgtctcccctctatgtgttgctcttctcgaccctgttc 404

                                                                       
Query: 121 tcagagaacctacattaaggcttaagcagagtctcaggacgcaccgcagccccactggtg 180
           |||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||
Sbjct: 403 tcagagaacctacattaaggcttaagcaaagtctcaggatgcaccgcagccccactggtg 344

                                                                       
Query: 181 ctgtgcaaaacctcacgatgtcgagctgaacaaagtccctaacaaggcctctacccagct 240
           |||||||||||||||||||| |||||||||||||||||||| |||||||||| |||||||
Sbjct: 343 ctgtgcaaaacctcacgatgacgagctgaacaaagtccctagcaaggcctctgcccagct 284

                                                                       
Query: 241 cacctgcaagcgccagatccgctcactttctttggagacgttctccaccgtctcccccat 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 283 cacctgcaagcgccagatccgctcactttctttggagacgttctccaccgtctcccccat 224

                                  
Query: 301 cagggcaatgagcatgttgagga 323
           |||||||||||||||||||||||
Sbjct: 223 cagggcaatgagcatgttgagga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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