Query= MSMg01no290_e07.b1 MSMg01no290_e07.b1 CHROMAT_FILE:
MSMg01no290_e07.b1 PHD_FILE: MSMg01no290_e07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:46 2005
(682 letters)
>mm_chr11_12313128_12314211
Length = 1084
Score = 1062 bits (549), Expect = 0.0
Identities = 579/589 (98%), Gaps = 2/589 (0%)
Strand = Plus / Minus
Query: 4 ggaattcatagag-atacagctatggagggtacagaaaattcaaatatctgttgtgtcta 62
||||||||||||| | | ||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 589 ggaattcatagagaaaagagctatgaagggtacagaaaattcaaatatctgttgtgtcta 530
Query: 63 ttgcattttgtggcccgctacctattctttactatatggcatttgtcctaatttgcaggt 122
||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 529 ttgcattttgtgggaggctacctattctttattatatggcatttgtcctaatttgcaggt 470
Query: 123 ttatttctgctcctctaccagacacatggcatttacagggtgattactactcaagatatt 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttatttctgctcctctaccagacacatggcatttacagggtgattactactcaagatatt 410
Query: 183 tttagtcacttaaaattcagaatatatactacaatctgttgtaatactatgactgccatt 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 409 tttagtcacttaaaattcagaatatatactacaatctgttgtaatactatgactgccatt 350
Query: 243 aacagtgctcaaaatatcttaatcagtgccaataattggccagctatt-aaaaaagtcat 301
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 349 aacagtgctcaaaatatcttaatcagtgccaataattggccagctattaaaaaaagtcat 290
Query: 302 atcaagcaggaaacaatacacatatacactgttatttgaggaaaacatgtagaatacatt 361
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ttcaagcaggaaacaatacacatatacactgttatttgaggaaaacatgtagaatacatt 230
Query: 362 tgttggcaaattcttcaatacaggactgtcttagtctttcagttattgtaacagatttcc 421
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 229 tgttggcaaattcttcaatacaggactgtcttagtctttcagttattgtaacagatttcc 170
Query: 422 tgattgttgctgatttttaaagagtaaaggtttactttggctcatagctctggagtctgg 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 169 tgattgttgctgatttttaaagagtaaaggtttactttggctcatagctctggagtctgg 110
Query: 482 aatcagcatctgtacctgatggtggcctcataattcatcataacatggaagaaaactgtt 541
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 109 aatcagcatctgtacctgatggtggcctcataattcatcataacatggaagaaaactgtt 50
Query: 542 acaaagatatgtgagcatgtgtgtggaatgagacataaacactagggtg 590
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 49 acaaagatatgtgagcatgtgtgtggaatgagacataaacactagggtg 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 682
Length of database: 1084
Length adjustment: 10
Effective length of query: 672
Effective length of database: 1074
Effective search space: 721728
Effective search space used: 721728
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no290_e07.g1 MSMg01no290_e07.g1 CHROMAT_FILE:
MSMg01no290_e07.g1 PHD_FILE: MSMg01no290_e07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:24:46 2005
(287 letters)
>mm_chr11_12143930_12144616
Length = 687
Score = 532 bits (275), Expect = e-155
Identities = 284/287 (98%)
Strand = Plus / Plus
Query: 1 ttgtccaccatcagcaaggacaatatgatgatgccatctggataggcacagctcttagtg 60
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 201 ttgtccaccatcagcaaggacaatatgatgatgccatctggataggaacagctcttagtg 260
Query: 61 tgtgaaggaaagtaatgctcatgcatgtattgggtatatacaaaaggaaacggcaaaagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtgaaggaaagtaatgctcatgcatgtattgggtatatacaaaaggaaacggcaaaagg 320
Query: 121 acagcatggggagatgtagctaggctttcacagaagcaagttaaggaggcaggttactgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagcatggggagatgtagctaggctttcacagaagcaagttaaggaggcaggttactgt 380
Query: 181 aagtgaagcttgagcatatactgagagcaaaggatgtcagctcaggcttacggcacactg 240
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cagtgaagctttagcatatactgagagcaaaggatgtcagctcaggcttacggcacactg 440
Query: 241 ccgcaagtactgtgaccaacagacaagcatctgagaaacatgcatgt 287
|||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccgcaagtactgtgaccaacagacaagcatctgagaaacatgcatgt 487
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space: 188484
Effective search space used: 188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
