BAC Information

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BAC

Clone NameMSMg01-290O17
Chromosome11 (Build37)
Map Location 78,168,907 - 78,350,651
singlet/doubletdoublet
Overlap geneFoxn1, OTTMUSG00000000132, Slc13a2, Slc46a1, A830091I15Rik, Vtn, Og9x, AI316787, Poldip2, Tnfaip1, Ift20
Upstream geneSsh2, Coro6, Ankrd13b, 2210008F06Rik, Git1, Trp53i13, 1300007F04Rik, Taok1, LOC668641, Nufip2, Cryba1, LOC100043506, Myo18a, Pipox, Sez6, LOC100043518, Phf12, Dhrs13, Flot2, Eral1, BC017647, LOC100043525, Traf4, Nek8, Tlcd1, Rpl23a, Rab34, 4933404M19Rik, Supt6h, Sdf2, 2610507B11Rik, BC030499, LOC100043544, LOC100042648, Spag5, Aldoc, Pigs, Unc119
Downstream geneTmem97, Nlk, LOC100043570, LOC100042674, 1810009O10Rik, 1810012P15Rik, Nos2, Lgals9, Ksr1, LOC100042697, Wsb1, Nf1, Omg, Evi2b, Evi2a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-290O17.T7 (MSMg01no290_o17.b1)MSMg01-290O17.TJ (MSMg01no290_o17.g1)
ACCAG420068AG420069
length726732
length of high quality
(start - end)
191 (105 - 295)239 (111 - 349)
definitionCHROMAT_FILE: MSMg01no290_o17.b1 PHD_FILE: MSMg01no290_o17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:35 2005CHROMAT_FILE: MSMg01no290_o17.g1 PHD_FILE: MSMg01no290_o17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:25:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(78,168,907 - 78,169,095)(78,350,413 - 78,350,651)
sequence
GTAGTAATTCCTGCAGGGGCGCGGAATTCAATTCCATTCCAACACAAGAG
GATCACAACCATCTGTAATGGGATCCAATGCCCTCTTCTGTTTTGTCTCG
AAACAGCTACAGTGTACTCACATTCATAAAATATATTTACATACATAAAA
TAAATACATCTTTAAAAAAAAAAGAAAAGAAACTTGACCTCATGCTCCCA
ATTCTCCTGCATCCACACTCCAAGAGCCTATATTACACATGTGCACTTCT
ACGACCCAGTAGTTTAAGAATTTTTGTGGAATCCCTAAACAAATGGGCTA
ANTCCTCCTCAAAAGTAGAGGATTTACAAATTCTCTGTTTTTTTCCCACC
TTAACCAGGGTCTGGTCAGCAGGGGGCAGCATAGGAGCAAGAGCGTGGGC
TTTGTTTTCAAAATGGAGTTGGGTCCAGTTTTATCTGATGTGCAATCTCG
GGACAAAGGACCGGAACAATTACACCCAAAATCCGATCTGTTTGACACCC
ACTGTCCTTGCTCAGGCAGCCAGCTCACACATGACGTGCCCATAGAGACA
GAGTTGATGGAAGGCCTCCTGGAGATTCCTTGTCTCCCAGATTAAGGTAT
ATTGGGGTAGTGGGATGCTTGACTGCGCCTCTATTTTTTATGTGTCAAGA
ACAAAGGAGGTGGGTTCAAGAACAGTTTCACGAATCACTTGTCCTGCGCC
TGATGGCCTGACCGCCAAGATGTATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXATGTGGAAACAGAAGGCTGTAACAGAAGAAAAGATTTGAAGCC
TATCGGCACTTCAGAGATCAGATGATGTCTGAATTGACAGAATTTAGTAA
TGCTTAATGCAGCACTTTGGAGAAAAGTGAAGAAAGGAGCCAAACACGAT
TGCCATGGATCTGGATTGGACCGAGAGTATGGCTGGAAAGGACAGTTTAA
AGAGATGGGTAAGATAGATATGGTACATAGCGGGCTATCAGATCCCCAGC
CCACCCCTAACTCCCACCACAAATATGCTCCAGGAACGTGGGATTGAGTT
TCCTAACCCTGACCGCTGTGCCTGGCTCTACGCTCCCTGGCTCTCCCAGG
TCCGCAGGCACAACAAATAGTTGTAGCTGTGGAGTTTGGAGAAGGCGTAT
ACACAGGAAGAACTGGGCAAATGGCGCGGCTGTCTTTACTAAATTATACT
CCTGCAATGTCCGAACCTCGGTTCACCGGTGACATCGAGGGAGCCAGGCT
GAGCTGAGTGTAAACCCGATCCCTAAAAACTCCGAGGTAGGGAAACCGCC
GCTTTCCACCCGGTCCAGCCAATCCTCGGTGCTGGGTCACGTTGGCCTCC
TCCCGTCCCAAGTCCTCCTCGTCCCCGACCTACCTGACGAGCCGCCTCGG
CAGCGCTCTGCGGTCCTGACCACTGTCTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no290_o17.b1 MSMg01no290_o17.b1 CHROMAT_FILE:
MSMg01no290_o17.b1 PHD_FILE: MSMg01no290_o17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:35 2005
         (191 letters)



>mm_chr11_78168707_78169297
          Length = 591

 Score =  327 bits (169), Expect = 3e-94
 Identities = 184/189 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agctacagtgtactcacattcataaaatatatttacatacataaaataaatacatcttta 60
           |||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 agctacagtgtactcacactcataaaatatacttacatacataaaataaatacatcttta 260

                                                                       
Query: 61  aaaaaaaaagaaaagaaacttgacctcatgctcccaattctcctgcatccacactccaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaaaaaaagaaaagaaacttgacctcatgctcccaattctcctgcatccacactccaag 320

                                                                       
Query: 121 agcctatattacacatgtgcacttctacgacccagtagtttaagaatttttgtggaatcc 180
           |||||| |||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 321 agcctagattacacatgtgcacttctatgacccagtagtttgagaatttttgtggaatcc 380

                    
Query: 181 ctaaacaaa 189
           |||||||||
Sbjct: 381 ctaaacaaa 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 191
Length of database: 591
Length adjustment: 8
Effective length of query: 183
Effective length of database: 583
Effective search space:   106689
Effective search space used:   106689
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no290_o17.g1 MSMg01no290_o17.g1 CHROMAT_FILE:
MSMg01no290_o17.g1 PHD_FILE: MSMg01no290_o17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:35 2005
         (239 letters)



>mm_chr11_78350213_78350851
          Length = 639

 Score =  462 bits (239), Expect = e-135
 Identities = 239/239 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcagagatcagatgatgtctgaattgacagaatttagtaatgcttaatgcagcactttgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 tcagagatcagatgatgtctgaattgacagaatttagtaatgcttaatgcagcactttgg 380

                                                                       
Query: 61  agaaaagtgaagaaaggagccaaacacgattgccatggatctggattggaccgagagtat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 agaaaagtgaagaaaggagccaaacacgattgccatggatctggattggaccgagagtat 320

                                                                       
Query: 121 ggctggaaaggacagtttaaagagatgggtaagatagatatggtacatagcgggctatca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggctggaaaggacagtttaaagagatgggtaagatagatatggtacatagcgggctatca 260

                                                                      
Query: 181 gatccccagcccacccctaactcccaccacaaatatgctccaggaacgtgggattgagt 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 gatccccagcccacccctaactcccaccacaaatatgctccaggaacgtgggattgagt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)