ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCACTTCTGACTGCATTTGCTGTGTGAGTCCTTACATGGCAGAAGAGGT
CACCAAGCTTCTCAGGCCTCATATAAAAACACATGGATGCTCTATATGAA
AACTCACAGCATACTAACCTACCAAAGATCTGACAACTCAATACTCTCAC
ATACAGGATGGATTTTCAGCATAGGAAGGAAACTGATGGTGACACCAGCA
CTAAGATAAAGGCAGACACTATGAGGACAAGAGAAGTTCTACCACAAAAC
CAGATGTGGACAGAGGAATGAGACAACATCAGCTACACATAGGAACATGG
CTAAATGTCTAGAGGCTAATGCTGAGCTCAAGATTTGGGGGTTGGAATTG
AAAAGACACCCCCGCCAATTTATAGTATATGTTGTTTCTTGCAGGGGATT
CAATTAGGTTTTCAACTACCACACAGGTCAGTTTACAAATGCTTTAGTTC
CAGCTCCCAGGGGGATTCTATACCTCTGGCCTCTGCTGGTGCATAAAACC
CTCACCAACATGTTCACAAAATTAGAACCAAATATTTAAAAAGATTTGGG
TTTTATAAATGAACAAAAGAAATTCATCTGACAGCTTAAAATGAGGAGCA
ATATAGCAGAGTGTATTTTAGAAACAAACAAACATACAAAGGACAAAAAC
CAAACTTGTTTGATAATGTATTTCAGTGTAGAACTTGCGTGN

CCTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXTTGCCCCAAGAAATTCCTGATATTTCTAAGACTTTTTATTC
ATGAAGTGGTATTATTCTTCGTTGAATGTTTTCTCAGCATATAATGAGAT
GATCATGTGGTTTTTGTCTTTGAGTTTGTTTGTATACAAATAATGTTGAT
GAATTTCCATATATTGCACCATCCTTGAATCCCTGGGATGAAGCCTACTT
GATCATGATGAATGATGGTGTTGATGTGTTCTTGGATTCTGTTTGTAAGA
ATTTTATTGAGTATTTTTGGCTTGATATTCATAAGAGAAATTGGTCTGAA
GTTCTCTTTCTTTGTTGGCTCTTTGTGTGGTTTAGGTATGAGAGTAATTT
TGCCTTCATAACACAAATTGGGTAGAGTACCTTCTGTTTATATTTTGTGG
AATAGTTTGAGGAGTATTGTAATTAGGTCTTCTTTGAAGGTCTGATAGAA
CTCTGCACTTAATCCATCAAGTCATGGGCTATTTTTTGGTTGGGAAACTA
TTTATGATTGTTTCTATTTCTTTAGGAGATATGGGACTGTTTAGATCATT
GATCTGATCATTATCTAACTTTGGTACCTGGTATGTGTCCAGAAAATTGT
CCATTCTATCCAGATTTTCTTGTTTTGTTGAGTATAGGCTTTTGTAGTAC
GATCTGATTATGCTGTGGATTTCTCAAATTCTGTTG

Query= MSMg01no291_a15.b1 MSMg01no291_a15.b1 CHROMAT_FILE:
MSMg01no291_a15.b1 PHD_FILE: MSMg01no291_a15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:25:44 2005
         (689 letters)



>mm_chr11_13320595_13321683
          Length = 1089

 Score = 1112 bits (575), Expect = 0.0
 Identities = 645/687 (93%), Gaps = 32/687 (4%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcacttctgactgcatttgctgtgtgagtccttacatggcagaagaggtcaccaag 64
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 gaattcacttctgattgcatttgctgtgtgagtccttacatggcagaagaggtcaccaag 621

                                                                       
Query: 65  cttctcaggcctcatataaaaacacatggatgct---------------------ctata 103
            |||||||||||||| ||||||||||||||||||                     |||||
Sbjct: 620 tttctcaggcctcatgtaaaaacacatggatgctctatatgaaaaccacagcatactata 561

                                                                       
Query: 104 tgaaaactcacagcatactaacctaccaaagatctgacaactcaatactctcacatacag 163
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgaaaactcacagcatactaacctaccaaagatctgacaactcaatactctcacatacag 501

                                                                       
Query: 164 gatggattttcagcataggaaggaaactgatggtgacaccagcactaagataaaggcaga 223
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gatggattttcagcataggaaagaaactgatggtgacaccagcactaagataaaggcaga 441

                                                                       
Query: 224 cactatgaggacaagagaagttctaccacaaaaccagatgtggacagaggaatgagacaa 283
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 cactatgaggacaagagcagttctaccacaaaaccagatgtggacagaggaatgagacaa 381

                                                                       
Query: 284 catcagctacacataggaacatggctaaatgtctagaggctaatgctgagctcaagattt 343
           ||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 380 catcagctacacagaggaacatggctaaatgtctagaggctaatgctgaactcaagattt 321

                                                                       
Query: 344 gggggttggaattgaaaagacacccccgc----caatttatagtatatgttgtttcttgc 399
           ||||||||||||||||||||||     ||    |||||||||||||||||||||||||||
Sbjct: 320 gggggttggaattgaaaagaca-----gcttggcaatttatagtatatgttgtttcttgc 266

                                                                       
Query: 400 aggggattcaattaggttttcaactaccacacaggtcagtttacaaatgctttagttcca 459
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aggggattcaattaggttttcaactaccacacaggtcagtttacaaatgctttagttcca 206

                                                                       
Query: 460 gctcccagggggattctatacctctggcctctgctggtgcataaaaccctcaccaacatg 519
           |||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gctcccggggggattctatacctctggcctctgctggtgcataaaaccctccccaacatg 146

                                                                       
Query: 520 ttcacaaaattagaaccaaatatttaaaaagatttgggttttataaatgaacaaaagaaa 579
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 ttcacaaaatttgaaccaaatatttaaaaagatttgggttttataaatgaacaaaagaaa 86

                                                                       
Query: 580 ttcatctgacagcttaaaatgaggagcaatatagcagagtgtattttagaaacaaacaaa 639
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85  ttcatctgacagcttaaaatgaggagcaatatagcagagtgtattttagaaacaaacaaa 26

                                      
Query: 640 catacaaaggacaaaaaccaaacttgt 666
           |||||||||||||||||  ||||||||
Sbjct: 25  catacaaaggacaaaaa--aaacttgt 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 689
Length of database: 1089
Length adjustment: 10
Effective length of query: 679
Effective length of database: 1079
Effective search space:   732641
Effective search space used:   732641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)