BAC Information

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BAC

Clone NameMSMg01-292C24
Chromosome11 (Build37)
Map Location 89,832,020 - 89,832,159
singlet/doubletsinglet
Overlap genenone
Upstream gene2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream genePctp, Tmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292C24.T7 (MSMg01no292_c24.b1)MSMg01-292C24.TJ (MSMg01no292_c24.g1)
ACCAG420977AG420978
length767789
length of high quality
(start - end)
140 (443 - 582)---
definitionCHROMAT_FILE: MSMg01no292_c24.b1 PHD_FILE: MSMg01no292_c24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:11 2005CHROMAT_FILE: MSMg01no292_c24.g1 PHD_FILE: MSMg01no292_c24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:11 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTCTCTACTTGTACTTCATTCATACTTCTGCCCTGAACAAGTAA
CATTCTTCACAACGTATGTCACCTTATCATGAACATGTGTACTTTCTGCT
GATATGAATGCTATTGACATCTGTTCCCAATCTGATGGTATCTTGCCTAA
CGCGTGCTCACTTACCCACTTTCTATGATCTGACGAAGCGTTTAGAGTTT
CCCTTTCTCATGAAAATACTGTCACCTATTATCTTTCTGCCTCTAATTCA
AGAAATTACTTATTACTTGTTGTTTATTACTTATTCTGGGAGAGTCATAG
GACACCACCCAGGGTTTTTTTTCATGCTCTCTCCCGAAGCCTCACACTGT
ATCCAAGGTACCTTTTTTCCCCCCCCCCCAACTTCCATTAAATCGGTTCA
CACACACATTTCAATCTGTCACGCTCCATTCCATAGGTGAAAGACCTGAA
CATGAAGTATTTGGCTCTTGGAGAGTTATGGTACAATTCTTGGCTCACCT
TGATAAATATTGATCTTGTATAAATTACTCAGGAGAGGCAGACGATTGCT
CTCTGGTTAGCTCACATACCTCCTCCTCCCCCTTTATGCTTAGACCCTTA
ATCATCTCTGAATACAGCCTCCCATGCACTATGTATCCAGCCCCTTTGAC
TCCCCGATCACCTGATACTCCAGTATTTTACTTCTCTTTACTCCCACCTT
TTTCTCTTCTTTTTTTT
ACGATGATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCCTCATCATTACTCTATCATCTCT
GCTCACAGAATTAACATTACGGTCCATACCCCAAACCTCAATCTGTAGAA
AGACCTACTCGCGCTGCTAAAGAATGCTGATGGCAGGTGAAATTCTTTCA
CTCTGTGAAATACATACAGCCTGATTGCCCGTAGAACTGTTGCATACGAG
TAACCTTATACCTACTGAGCACGCTGTATTATGAATTTGAATGTATATGC
TTAAACGTGGATGCTCAAGAATATGTGTGCACTGGTAATTATGGCACAAA
GAGGCGATGTGTGAGAGCTAGGGGTTATTTTTTGTTCCCCCCCACCCGCC
TGTGAAGAGTAAGGGGAACTGATATCTCTGCCCCCCTCCCACAAAATATA
AAATAATTAAGATTTACGCCAACCATGTCCTGATCATTGTATTTTATATA
TGACTTTATCCTCTTTATTTGTCGAATTCTACCGCGTACTGACTTCATAT
TATCGCTTTTCATTCTTCCCCCGTTTCTTAGTATTTCTTTCCTTTTCTCC
CCTTTTTCTTTTTTTCGCTTCCCCCCCTTCTCCCTTATTGCTTTTCTTTC
TTTTTTCATTCCCCTCTTTGTTTCCTCTCTCATCTCTTCCATTTCCCACA
CTCTCCTCTTTTCCCCTCTTTTACCCTTTTCCATTCCACTTTCTTCGTTT
ATTTCTCTTTCTTCTTTTTTCTTCACACCCTTTTTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_c24.b1 MSMg01no292_c24.b1 CHROMAT_FILE:
MSMg01no292_c24.b1 PHD_FILE: MSMg01no292_c24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:11 2005
         (140 letters)



>mm_chr11_89831820_89832359
          Length = 540

 Score =  271 bits (140), Expect = 1e-77
 Identities = 140/140 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcggttcacacacacatttcaatctgtcacgctccattccataggtgaaagacctgaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcggttcacacacacatttcaatctgtcacgctccattccataggtgaaagacctgaaca 260

                                                                       
Query: 61  tgaagtatttggctcttggagagttatggtacaattcttggctcaccttgataaatattg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgaagtatttggctcttggagagttatggtacaattcttggctcaccttgataaatattg 320

                               
Query: 121 atcttgtataaattactcag 140
           ||||||||||||||||||||
Sbjct: 321 atcttgtataaattactcag 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 6
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 140
Length of database: 540
Length adjustment: 8
Effective length of query: 132
Effective length of database: 532
Effective search space:    70224
Effective search space used:    70224
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)