BAC Information

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BAC

Clone NameMSMg01-292D24
Chromosome11 (Build37)
Map Location 89,831,648 - 89,988,932
singlet/doubletdoublet
Overlap genePctp, Tmem100
Upstream gene2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1
Downstream geneLOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292D24.T7 (MSMg01no292_d24.b1)MSMg01-292D24.TJ (MSMg01no292_d24.g1)
ACCAG421020AG421021
length753755
length of high quality
(start - end)		611 (68 - 678)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no292_d24.b1 PHD_FILE: MSMg01no292_d24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:16 2005CHROMAT_FILE: MSMg01no292_d24.g1 PHD_FILE: MSMg01no292_d24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(89,831,648 - 89,832,258)(89,988,642 - 89,988,932)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCATCTATATCCATTCTAGACCTATACTTTTGGTCTCTATAGCATA
GTACTTTCCAGTCATATGTTCCTAAATATTTACATAGATATCTGCCCCAG
AGATAAAACCAGGTAATAACTGTTTCCTAAGTGGGTGTAAATTGCCTAAC
AGGTGCTCACTTACCTACATACTAACAAAATAACAAAGTGGGACAGTTTC
CCTTTCTCATGAGAATACTGTCACCTATTATCTTTCTGCCTCTAATTCAA
GAAATTACTTATTACTTGTTGTTTATTACTTATTCTGGGAGAGTCATAGG
ACACCACCCAGGGTACAAATCCATGCTCTCTCCCGAAGCCTCACACTGTA
TCCAAGGTACCAAGAAGCGCGTAAGCAGCTTCCTTTAAGTCGGTTCACAC
ACACATTTCAATCTGTCACGCTCCATTCCATAGGTGAAAGACCTGAACAT
GAAGTATTTGGCTCTTGGAGAGTTATGGTACAATTCTTGGCTCACCTTGA
TAAATATTGATCTTGTATAAATTACTCAGGAGAGGCAGACGATTGTTCTC
TGGGCAGCACACATACCTCCCCCTCCCCCTTTATGCAAAGACATAAATCA
CCCATGAATAGAGCCCCACATGCACTATGAATAAGAGCCTTTGGATTCCC
GGATGACTGATACTCACGTATTTTACTCTTTTGAGGGCAGACCTAAATTT
ATN

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCTTCTCTTCTTCTCTTCTC
AAACACAAGAGACAAAGGCCAAAGCCGGCAAGGAGAACATGTTGGGTTCC
TTCTCCAATGTGGAATTAAGCCATTGCCAAGCCAGCAAAACAGATACCAG
AAATACTAAAGTCAACACACTGAGGTCTGGAGGACAGGTTTAACCCTCAC
ACACACAAAGCACCCTGAGGATGGCGGTTAAAAGAAACAATTTATTGGTG
AGGCTCTAGAGATTATGGTCTCATGGAGTTTTGTCTCTAGTAGGTGCAAT
GTATTTGCTATGTGGAATGTATTGTTCCAGCATCCAAAGCTATAAAGACT
AGAGGTCTCTGATCTCTCACCCCATCTGAAAGTGAGTGGATGTGAGGGAG
TGTGTGCGTGNTTGTNAATANNTTATGNATATATGTGNGAATGCATGTAT
AGACCATATGCATATATGTGTGCATGCATGTGGATCACACAGGCCAACCT
TGGTAGCTAAGTTCTCTCGTATCACTCAAGTCTTCTCTCCTATCTTTTCC
ACCACATCCTCTATTATCTACTTTTATTATCTTACTTCTTCTTTGACACA
CATTACCATTCTTTTTCGCTTTATATGATAACGGTCTTTTTTTTTTTCCT
CGCACTCCTTACTTGCCCTCTTTACTCCCCTTCTTATCTTTTGTATCTTC
CCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_d24.b1 MSMg01no292_d24.b1 CHROMAT_FILE:
MSMg01no292_d24.b1 PHD_FILE: MSMg01no292_d24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:16 2005
         (611 letters)



>mm_chr11_89831448_89832458
          Length = 1011

 Score = 1158 bits (599), Expect = 0.0
 Identities = 608/611 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   ttctagacctatacttttggtctctatagcatagtactttccagtcatatgttcctaaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttctagacctatacttttggtctctatagcatagtactttccagtcatatgttcctaaat 260

                                                                       
Query: 61  atttacatagatatctgccccagagataaaaccaggtaataactgtttcctaagtgggtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttacatagatatctgccccagagataaaaccaggtaataactgtttcctaagtgggtg 320

                                                                       
Query: 121 taaattgcctaacaggtgctcacttacctacatactaacaaaataacaaagtgggacagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaattgcctaacaggtgctcacttacctacatactaacaaaataacaaagtgggacagt 380

                                                                       
Query: 181 ttccctttctcatgagaatactgtcacctattatctttctgcctctaattcaagaaatta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttccctttctcatgagaatactgtcacctattatctttctgcctctaattcaagaaatta 440

                                                                       
Query: 241 cttattacttgttgtttattacttattctgggagagtcataggacaccacccagggtaca 300
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 441 cttattacttgttgtttattacttattctgggagagtcataggacaccacccagggcaca 500

                                                                       
Query: 301 aatccatgctctctcccgaagcctcacactgtatccaaggtaccaagaagcgcgtaagca 360
           |||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct: 501 aatccatgctctctcccgaagcctcacactgtatccaaggtaccaagaagtgtgtaagca 560

                                                                       
Query: 361 gcttcctttaagtcggttcacacacacatttcaatctgtcacgctccattccataggtga 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gcttcctttaagtcggttcacacacacatttcaatctgtcacgctccattccataggtga 620

                                                                       
Query: 421 aagacctgaacatgaagtatttggctcttggagagttatggtacaattcttggctcacct 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagacctgaacatgaagtatttggctcttggagagttatggtacaattcttggctcacct 680

                                                                       
Query: 481 tgataaatattgatcttgtataaattactcaggagaggcagacgattgttctctgggcag 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tgataaatattgatcttgtataaattactcaggagaggcagacgattgttctctgggcag 740

                                                                       
Query: 541 cacacatacctccccctccccctttatgcaaagacataaatcacccatgaatagagcccc 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 cacacatacctccccctccccctttatgcaaagacataaatcacccatgaatagagcccc 800

                      
Query: 601 acatgcactat 611
           |||||||||||
Sbjct: 801 acatgcactat 811


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no292_d24.g1 MSMg01no292_d24.g1 CHROMAT_FILE:
MSMg01no292_d24.g1 PHD_FILE: MSMg01no292_d24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:16 2005
         (291 letters)



>mm_chr11_89988442_89989132
          Length = 691

 Score =  563 bits (291), Expect = e-165
 Identities = 291/291 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttctcttctcttcttctcttctcaaacacaagagacaaaggccaaagccggcaaggaga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 491 cttctcttctcttcttctcttctcaaacacaagagacaaaggccaaagccggcaaggaga 432

                                                                       
Query: 61  acatgttgggttccttctccaatgtggaattaagccattgccaagccagcaaaacagata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 431 acatgttgggttccttctccaatgtggaattaagccattgccaagccagcaaaacagata 372

                                                                       
Query: 121 ccagaaatactaaagtcaacacactgaggtctggaggacaggtttaaccctcacacacac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ccagaaatactaaagtcaacacactgaggtctggaggacaggtttaaccctcacacacac 312

                                                                       
Query: 181 aaagcaccctgaggatggcggttaaaagaaacaatttattggtgaggctctagagattat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 aaagcaccctgaggatggcggttaaaagaaacaatttattggtgaggctctagagattat 252

                                                              
Query: 241 ggtctcatggagttttgtctctagtaggtgcaatgtatttgctatgtggaa 291
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 ggtctcatggagttttgtctctagtaggtgcaatgtatttgctatgtggaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 691
Length adjustment: 9
Effective length of query: 282
Effective length of database: 682
Effective search space:   192324
Effective search space used:   192324
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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