BAC Information

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BAC

Clone NameMSMg01-292L12
Chromosome11 (Build37)
Map Location 80,948,747 - 80,949,106
singlet/doubletsinglet
Overlap geneAccn1
Upstream geneAtad5, 1110002N22Rik, Centa2, Rnf135, Rhot1, Rhbdl3, 5730455P16Rik, Zfp207, LOC100043601, LOC100042726, Psmd11, Cdk5r1, Myo1d, Tmem98, Spaca3
Downstream gene1700071K01Rik, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-292L12.T7 (MSMg01no292_l12.b1)MSMg01-292L12.TJ (MSMg01no292_l12.g1)
ACCAG421363AG421364
length778772
length of high quality
(start - end)
365 (46 - 410)284 (76 - 359)
definitionCHROMAT_FILE: MSMg01no292_l12.b1 PHD_FILE: MSMg01no292_l12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:51 2005CHROMAT_FILE: MSMg01no292_l12.g1 PHD_FILE: MSMg01no292_l12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:27:52 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTAGGGTTGCATTTTTCCCATTTGAAAGGAGAAGCTGCCTAGAGA
CGTAAGGCTCCGTCCCATTACCACTTCTAGGGGGTCAGTGTTTCCAGGCT
GCTCGGGCCACGTTGTTCCTGCACACTGTGTGGGTGAGGGAGGCAGTTCC
ACTTCAGAAGGAGCCAGATGTACCCACAGCACAAAGAACAAGGGCTGGAG
CTGTGGAAGCTGAATTTTCTATGTTGGAAGGAAGGAGGCAGATGCTTCTC
CCATGCTGGCTTTGCTTTGCCAGCCCCATGATGAATGGAATCCTTCCCCA
TCCCTGGGTGGTCTCCTCTTCTTGCCTTCCAGGTCTCCACACAGCAACCC
TTCCCTCAGGGGGCCCCCCCCACCCTGCTCCTTGTCTTTAAATGCCTCTC
ACTGACCCACCGAGATATCCCTGGCTCTTAAATCTTTCCCCAGCATTTGG
GGTTATCGATTTGTTTGCTACCGATTGTTATGGCATTACTGTCTCTTCTC
TTATAATCTAACTTCATTCTCTTCTACTCTTTGTTTTTTACTAATACTCT
TCTGTCTCCTGATGGTCATATTCTATTTTACTCATCTGTTTCTTCCCCGC
CCATCATCCTCCATACCCCTCTTTCCTTATTCCTTCCCGCATTTTCCCTC
TTCTTTTTCTTTTTACTCTATTCTTTTTATCTTACCCTATTTCCTTTTTA
TCTTCCTCTCCATTCCTTCTTTATCCTN
ACGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAACTCCTGTACCTGTTTGCTTTGTT
TCACATACTTTTTAAAAAGTTTCATGTACATGAGTACACTGTCTGACACA
CCAGAAGAGGGCATCAAGATCCCATTACAGATGGTTGTGAGCCACCATGT
GGTTGCTGGGAAATGAACTCAGGATCTCTGGAAGAGCAGTCAGTGCTCTT
AACCACTGAGCCATCTCTCTACACTTTTACACCATTTCAGTTACCCATGT
TTTAAATGGGACATTTTCCCATTATGTTCAGATTTCAGGGATTGATTCTA
GCAATCTTTTTTTTTTACACCCCCCCCCCCCTCCTTCTCGTGACAAAAGA
GCAGATAGTTTTTCCCCCCCCCATGATTCAAAGAATTCTCTTTCCCAGAT
CCGTGGGCTCTCCAGTTCTTGATACTCAAAGTGTGGTGCAGAGTCGCAAC
AAGATTACCACTTGGGGAAACATTTGATAAGCAACACCCCGGTTTCTTCC
CTAAAGTTATCAGATTTGAGTCAGTACCTGGGCTTTGTTCCCTGTTCCAT
TTCTACCTATTTCCCTTTAATTCTATTATTACTTTTTTTTTTCTCTTTTC
TCCTTCCTTCATTTTCCCTTCCCTACTTCCCCTTTCCTCATCCTTTTTCT
CCTTCCTCTCTCTTCCTTTCTTTTCCCCTCTTCTCCCTCCCCCCCTGCTT
CCTTTACCTTTCATCCTCCCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no292_l12.b1 MSMg01no292_l12.b1 CHROMAT_FILE:
MSMg01no292_l12.b1 PHD_FILE: MSMg01no292_l12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:27:51 2005
         (365 letters)



>mm_chr11_80948543_80949306
          Length = 764

 Score =  659 bits (341), Expect = 0.0
 Identities = 356/361 (98%), Gaps = 1/361 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttagggttgcatttttcccatttgaaaggagaagctgcctagagacgtaaggct 64
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 205 gaattcttagggttgcatttttcccatttgaaaggagaagctgcctagagacttaaggct 264

                                                                       
Query: 65  ccgtcccattaccacttctagggggtcagtgtttccaggctgctcgggccacgttgttcc 124
           ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ccgtcccattagca-ttctagggggtcagtgtttccaggctgctcgggccacgttgttcc 323

                                                                       
Query: 125 tgcacactgtgtgggtgagggaggcagttccacttcagaaggagccagatgtacccacag 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcacactgtgtgggtgagggaggcagttccacttcagaaggagccagatgtacccacag 383

                                                                       
Query: 185 cacaaagaacaagggctggagctgtggaagctgaattttctatgttggaaggaaggaggc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cacaaagaacaagggctggagctgtggaagctgaattttctatgttggaaggaaggaggc 443

                                                                       
Query: 245 agatgcttctcccatgctggctttgctttgccagccccatgatgaatggaatccttcccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agatgcttctcccatgctggctttgctttgccagccccatgatgaatggaatccttcccc 503

                                                                       
Query: 305 atccctgggtggtctcctcttcttgccttccaggtctccacacagcaacccttccctcag 364
           |||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 504 atccctgggtggcctcctcttctcgccttccaggtctccacacagcaacccttccctcag 563

            
Query: 365 g 365
           |
Sbjct: 564 g 564


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 365
Length of database: 764
Length adjustment: 9
Effective length of query: 356
Effective length of database: 755
Effective search space:   268780
Effective search space used:   268780
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)