BAC Information

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BAC

Clone NameMSMg01-294F17
Chromosome11 (Build37)
Map Location 103,741,650 - 103,741,883
singlet/doubletsinglet
Overlap geneNsf
Upstream geneEftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml, Gosr2, Wnt9b, Wnt3, EG667631
Downstream geneArf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294F17.T7 (MSMg01no294_f17.b1)MSMg01-294F17.TJ (MSMg01no294_f17.g1)
ACCAG422551AG422552
length725713
length of high quality
(start - end)
---234 (133 - 366)
definitionCHROMAT_FILE: MSMg01no294_f17.b1 PHD_FILE: MSMg01no294_f17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:01 2005CHROMAT_FILE: MSMg01no294_f17.g1 PHD_FILE: MSMg01no294_f17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:01 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTTAAATCTTATATTTGCGGCGCTATAAGAGGCCATTCGGACCCGAGGNG
GANGGAGNTTTACGGNACAAGGAGGGNNNAGAGAGAANANNNNNNANNAN
AGANGNNNGAGTATAACAAAAAAAAAGAGGAGACGCNNANAGCCCNGGAN
NCACGGGNGGGNCAANGGGAAGGNGGACCACNGGGNCCACCAACGACAGA
CAGGACGCGACCAGAACACACGGCCGGAGCCCNCAGCCGGGCTTTTTTTG
AGAGAAGACCCGGAAGGCACCCAGGGAAACAAAGGGCAGCCAGACNGAGC
ACGACGGCTTTTGCCTACTTTCAAGCGAGAGGACAGAAAGGGGAAAAGTT
TTTTTTTTTTTCCCCCCCCCCCCCCCCAGAGGAGGGGAAGAGGGGGGGGG
GGGGGCGGCCCAAAAAAACACCAAAAAAAGGGGGGGNCCGCCCGGGGGCC
CCCCCCNNCCCCCNCCCCCNCNCGGCCGGGCGGGGGCGGGGGCCCCCNCG
CCGCCCCCGCCCCCCCCCCCGGGCCGCCGCCGCCGGGGGCGGGGGCGGGG
GGCCCCCGCCCCCGCCCGCCCCGCCGCGCGCCCCGCNCCGCGCCCGCGCG
CGCCCCCCCGCGCCCCCGCCCCCCCCCCCCGCGCCCCGCCCNCCGCCGCC
CCCCCCCCCCGGCGGCCCTTTTTTTTTTTTTCTCTCCCCCCTGGCCCCCC
GCTCTCCTGCCTTCCTTTTCTATTC
NNAAAAACTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTTTTCTTTTTGTTCT
TTGGAAACTTAGAAAAAAGAAAAATTTGACACAGCAGTCCCTATAAATAG
TTGCAACTGCTTTAAAAAACAAACAAACAAAACCAAAACAAACTAAAGAA
GTAAAACAGCCTAATGGGCCCCAATAGTTACACACTAAACAAAGATGAGT
TAACACGATCTAGAGAAACAGCTCATAAAAGCTCACTGGTGAGAGTTTCC
TTGTAACTGCGAAGATAACTTTGGTACTGTTTTTAAACTCAGTCAGTTTA
AACATGACACTACTAACTATGTTATTTCCCCCCCCCCCCTGCCTAAGTCT
CCCCGGTCCCCAGCCCTCACTCGCACGGTCCAGAAAAAAACCTCCTGCTG
CCCACGCCATGGGCCTCAGCTCCAACTCTGCTGCGGGAGTTGAGTGGATC
GCGGCCGATACCTTTGCTGCTGGCACAGCCACTCTCGGTTACCTGGCTTA
CAAGAAGTTCTACGCTAAAGAGAATCGCACCAAAGCTCTGGTGAATCTTC
AGATCCGGAAAGACAACCCAAAGGTGGTGCCTGCCTTCCACATGGAGGAT
CTGGGGGATAAGGCCGTGTACTGCCGATGCTGGAGGTCTAAAGAGTTCCC
CTTCTGCGATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_f17.g1 MSMg01no294_f17.g1 CHROMAT_FILE:
MSMg01no294_f17.g1 PHD_FILE: MSMg01no294_f17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:01 2005
         (234 letters)



>mm_chr11_103741450_103742083
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   agcagtccctataaatagttgcaactgctttaaaaaacaaacaaacaaaaccaaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 agcagtccctataaatagttgcaactgctttaaaaaacaaacaaacaaaaccaaaacaaa 375

                                                                       
Query: 61  ctaaagaagtaaaacagcctaatgggccccaatagttacacactaaacaaagatgagtta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 ctaaagaagtaaaacagcctaatgggccccaatagttacacactaaacaaagatgagtta 315

                                                                       
Query: 121 acacgatctagagaaacagctcataaaagctcactggtgagagtttccttgtaactgcga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 acacgatctagagaaacagctcataaaagctcactggtgagagtttccttgtaactgcga 255

                                                                 
Query: 181 agataactttggtactgtttttaaactcagtcagtttaaacatgacactactaa 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 agataactttggtactgtttttaaactcagtcagtttaaacatgacactactaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)