BAC Information

Click to search

BAC

Clone NameMSMg01-294I17
Chromosome11 (Build37)
Map Location 74,485,899 - 74,486,211
singlet/doubletsinglet
Overlap genenone
Upstream gene1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402, Olfr403, Olfr43, Olfr404-ps1, Olfr405-ps1, Olfr406, Olfr407-ps1, Olfr59, Olfr408-ps1, Olfr409-ps1, LOC193079, Olfr410, Olfr411, Olfr412, Garnl4, E130309D14Rik, 1300001I01Rik
Downstream genePafah1b1, Mett10d, Mnt, Rutbc1, Tsr1, Srr, LOC100042478, Smg6, LOC100043429, LOC627835, Hic1, LOC668604, Ovca2, Dph1, Rtn4rl1, Rpa1, Smyd4, Serpinf1, LOC100043447, Serpinf2, Wdr81, LOC100042498, 2010305C02Rik, Prpf8, Rilp, Scarf1, Slc43a2, Pitpna, LOC654359, Pps, Myo1c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294I17.T7 (MSMg01no294_i17.b1)MSMg01-294I17.TJ (MSMg01no294_i17.g1)
ACCAG422689AG422690
length726726
length of high quality
(start - end)
316 (41 - 356)287 (71 - 357)
definitionCHROMAT_FILE: MSMg01no294_i17.b1 PHD_FILE: MSMg01no294_i17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:15 2005CHROMAT_FILE: MSMg01no294_i17.g1 PHD_FILE: MSMg01no294_i17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:15 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AAGGATATCCCGAGCTAGATACTGACCCGGTTTCAAGACTCCCAAAATGA
AGGGCTATCTTACTGGCCTCTTCATACTGAGGAACTAATATAAAGTAGCC
AAGTATGGTGGATGCCTTTTAGTCCCAGCACTTGGGAAGCAGACAGGTGG
ATCTCTGTGAGTTCCAGGACAACCAGAGCTTACATAGTGAGACCCTGCAT
TTAAAATAAATAAATTTCCAACTACTGTCAGTGAAATGGTTCAGTAGAAA
AAGGTACTTATTGTCAAATCTGACTTCACTTTCAATGGTAGAACGCATTC
CCAAATAATCTCTGGCCTTACACTGCAGCATAAACACATGCACATAGTAA
TTTTAAAATTCCCCCACCAACTAATCTTTTTTTTTTTTTTTTTTTGGCTT
TCAAGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACATTG
TAGACCAGGCTGGCCTCGAACTCGGAAATCCTCCTGTCTCTGCCTCCCAA
GTGCTGGGATTAAAGGCGTGTGCCTCGACAACCGGCCCAAAAGCTAACTA
TTTTCCGTGTCCATTGAGATGAATGTGCAGTGACCACTTGTGGAAGCCAA
GACTGGTTATGTGGCTCCCTGATATAACCCCCCCCCCTGATCCTGCCAAT
CAGGTAGGGGGCCTAAGGATATTTTT
CXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXAGAGACGGGTATAGGATATCCTGGAATTGA
AGTTAACAGTGTGAGCCACTATTTGGGAGCTGGTGATCAAACTCAGGTCC
TCCAAAAGAGCAGCCAGTGCTGAGCCATCTTCCCGGGCCTTAACAGGCTG
TTAATTTTCCTATTTACATGTGCCTGCATCGCATGCATGCAAATGCTCAT
GGGAACCACAAGAGGGAGTCAAGAGCCCTGCAACTGGAGCCTCGAGCAGT
TAGCTACTTGATGTGGTTGCTGGAGACCCAACCTGGGTTCATGGTATAAG
AGCACCTCTTGTTCTGCCTCCCGACCCAGCTCTGGAACCCCATTACCAGG
GTTTTAATTACTCACGCCATCACACAACCTCACCCTTCAGCAGCCTTCAG
GGTGCCACCTCTTGCTGCTTCCCTGTGGGTCCCTGCCTCTTGAAATGAAA
TGACCCAGATGCTGCAGGCTTGGGAGCTCCTTCTCAGGTTTCAGTGCAGA
TTTATTTCAGTTTTATATTTTATTCCAGGCAAGTGCTTATTACATGGATA
GCATTCTTGTCTCAATACCTAAACTCAGAGCATGAACAGCCACTAGAGTA
CAGTTCAATAGTAAAAATACAATATGTACAAAACTAGGGTTTTTGTACTT
TTTTTTTTTCTCCACTACGTCAATGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_i17.b1 MSMg01no294_i17.b1 CHROMAT_FILE:
MSMg01no294_i17.b1 PHD_FILE: MSMg01no294_i17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:15 2005
         (316 letters)



>mm_chr11_74485696_74486411
          Length = 716

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcaaggatatcccgagctagatactgacccggtttcaagactcccaaaatgaagg 63
           |||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcaaggatagcctgagctagatactgacccggtttcaagactcccaaaatgaagg 263

                                                                       
Query: 64  gctatcttactggcctcttcatactgaggaactaatataaagtagccaagtatggtggat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gctatcttactggcctcttcatactgaggaactaatataaagtagccaagtatggtggat 323

                                                                       
Query: 124 gccttttagtcccagcacttgggaagcagacaggtggatctctgtgagttccaggacaac 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 324 gccttttagtcccagcacttgggaagcagacaggtggatctctgtgagttccaggccaac 383

                                                                       
Query: 184 cagagcttacatagtgagaccctgcatttaaaataaataaatttccaactactgtcagtg 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 cagagcttacatagtgagaccctgcatttaaaataaataaatttccaactactgtcagtg 443

                                                                       
Query: 244 aaatggttcagtagaaaaaggtacttattgtcaaatctgacttcactttcaatggtagaa 303
           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 444 aaatggttcagtagaaaaaggtacttattgtcaaatctgactccactttcaatggtagaa 503

                        
Query: 304 cgcattcccaaat 316
           |||||||||||||
Sbjct: 504 cgcattcccaaat 516


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 316
Length of database: 716
Length adjustment: 9
Effective length of query: 307
Effective length of database: 707
Effective search space:   217049
Effective search space used:   217049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)