BAC Information

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BAC

Clone NameMSMg01-294J24
Chromosome11 (Build37)
Map Location 24,909,626 - 24,909,915
singlet/doubletsinglet
Overlap genenone
Upstream geneA830031A19Rik, LOC100042256, Bcl11a, LOC100042282
Downstream gene5730522E02Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294J24.T7 (MSMg01no294_j24.b1)MSMg01-294J24.TJ (MSMg01no294_j24.g1)
ACCAG422750AG422751
length732734
length of high quality
(start - end)
325 (50 - 374)292 (85 - 376)
definitionCHROMAT_FILE: MSMg01no294_j24.b1 PHD_FILE: MSMg01no294_j24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:21 2005CHROMAT_FILE: MSMg01no294_j24.g1 PHD_FILE: MSMg01no294_j24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CACATCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCTCACCTGAGGAATACCGAATGGCAGAGAAGCATCTGAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACCAGTCAGAATGTCTAAGATCAAAAATTCAGGTGAC
AGCAGATGCTGGCGAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTG
GTGGGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCC
TCAGAAAATTGGACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTG
GGCATATATCCAGAAGATGCCCCTTCTGGTAAGAAGGACACATGCTCCAC
TATGTTCATAGCAGCCTTATTTATAATAGCCAGAAGCTGGAAGGAACCCA
GATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACA
ATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGC
CAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCAC
AAAGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAA
ACCTAGGATACCCAAGATAGAAGATACAATTTCCTAAACACATGANACTC
AAGAAAAATGAAGACTGAAGTGTGGACACTAT
NAAACGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCAAGGAAAGTAGAGGG
ATACCCTAATCAGAGGCGTCCATGCCTGAGACACACAAGAAGTAATATCT
GGCTTTTAGTTTTATGAAAGCATCCAGGCTCCATACCAGGAAAAACACAG
GCATGTGGAACAATGTTGAACTTTTCATCTTGTTCTATCCCTTAACTCTT
TACCAATTAAAAACCTAAAGATGGCAAGAGTTGGGTAAGTCAAATATTGG
ATGACTAACAAAGCTACTGACAATTGCATGGTGCTCACACAACAAAAACA
AAAGGTCAATCCAAATTCAGAGTATTCTTATGGTAAATCAAGCCTTTTAC
TTAAGAATCCTGAAGGGGGAACAGAGCACCCTTCAAAAGAACAGAAATTC
AGGAATTTCTCCTAAAGACAACCTGTGATTTCAAAAAACTCTAGCCACAT
ACTGATAAATGCCACAAGAAATGGATATTTGGAAGACAATTACATAAAAA
ACCTCTGTGATTTTTTTCTATGCAACTATATTGATAGGTAAAAATAACTG
GGCGTACTGAGATGATCAAACGATTAAAAACCAAAAGGTGAAAGTTGAAT
AGACATAGAAATGATTTANATGTTACAATGAAAGCTTAAGGGCTTTATTC
TCAAAACAAGGAATATATCCTTTTCAAACACATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_j24.g1 MSMg01no294_j24.g1 CHROMAT_FILE:
MSMg01no294_j24.g1 PHD_FILE: MSMg01no294_j24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:21 2005
         (292 letters)



>mm_chr11_24909426_24910117
          Length = 692

 Score =  561 bits (290), Expect = e-164
 Identities = 290/290 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caaggaaagtagagggataccctaatcagaggcgtccatgcctgagacacacaagaagta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 490 caaggaaagtagagggataccctaatcagaggcgtccatgcctgagacacacaagaagta 431

                                                                       
Query: 61  atatctggcttttagttttatgaaagcatccaggctccataccaggaaaaacacaggcat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 430 atatctggcttttagttttatgaaagcatccaggctccataccaggaaaaacacaggcat 371

                                                                       
Query: 121 gtggaacaatgttgaacttttcatcttgttctatcccttaactctttaccaattaaaaac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 gtggaacaatgttgaacttttcatcttgttctatcccttaactctttaccaattaaaaac 311

                                                                       
Query: 181 ctaaagatggcaagagttgggtaagtcaaatattggatgactaacaaagctactgacaat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 ctaaagatggcaagagttgggtaagtcaaatattggatgactaacaaagctactgacaat 251

                                                             
Query: 241 tgcatggtgctcacacaacaaaaacaaaaggtcaatccaaattcagagta 290
           ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 tgcatggtgctcacacaacaaaaacaaaaggtcaatccaaattcagagta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)