BAC Information

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BAC

Clone NameMSMg01-294N03
Chromosome11 (Build37)
Map Location 28,382,840 - 28,537,234
singlet/doubletdoublet
Overlap geneCcdc85a
Upstream geneLOC100042377, EG626571
Downstream geneEfemp1, LOC382504, Pnpt1, A630052C17Rik, Smek2, LOC100042972, Ccdc104, LOC672637, LOC100042985, A430106J12Rik, 2010316F05Rik, LOC100042990, Mtif2, Rps27a, 1700034F02Rik, LOC628830, LOC666403
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-294N03.T7 (MSMg01no294_n03.b1)MSMg01-294N03.TJ (MSMg01no294_n03.g1)
ACCAG422894AG422895
length738739
length of high quality
(start - end)		648 (49 - 696)288 (78 - 365)
definitionCHROMAT_FILE: MSMg01no294_n03.b1 PHD_FILE: MSMg01no294_n03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:35 2005CHROMAT_FILE: MSMg01no294_n03.g1 PHD_FILE: MSMg01no294_n03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:30:35 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(28,536,591 - 28,537,234)(28,382,840 - 28,383,126)
sequence
GGATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTGGAAAATGACTAAACAAAGGTAATCATTTAGCAACATTGAA
AGAATTGAAACTGATAATTTAGAAGCTTAATGTGAGATGCCCAAACAGCA
ATTGGAACAGTAAATGGACTGTACAAAGTCTAGCTGGGGAGAGATAGAAG
CATAAAGACAAAACTAGTTAGCATCTCCCCCAGGCCACCTCTTCCTCAGA
GCAGAATAGAAAGCAAAACCCCCACAGTTCCAGTCCTGCCACACAGTGTT
AGCAAGGAAGTCAGAGCAGGTCACAGTATTTCTAATTCAGATTAATGACC
CCATTCAGCCCTGTCTCCTTAGCAGGAAATTAGGAAGCAGAGGAAGGAGC
AGGAGTGATTCATAACCCATGGTTCTGGCTATTGGCAGTTGTGCTCGTTA
AAAGCAAAGACATTGTTTTAATATTAAAAAATCGAGTCTGACTTATTTAT
AGGATGAAGTGTTCTCCATCACATTTATAAAGGCAGCTGGTTACATACCC
ATATTTTTGAAGGACAGGAGAACTAATCCTTGCTCCTTTGTGTTTGTCTC
AGCTATAAAGGGAAGTTTGGGTGAAAGATAATGCATGTTGTGTTTTTCTA
GTACTTAGCTATTGACTCTACATCTCTTCTGCCCATCATGGTCTCTGCCC
ACTAGGGCTTGGTTCTGGTTCTCCATTTTCTGCCATGG

TCGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCTAAATCCTCTGGAAGAAAGAA
GAATTCCTGTACTCAAAAGAATCTTACCCTTGGAAGCCAGGCAGCAGCGT
ACTTGAGCACGTGACAGCATAGCTGTGGTTTGACATCAGTGTTTCTCTTC
TATCCAAGCATTACCATTTAGTACAGCTCAAGCATACTCCTCCAAAACTC
AAGGTCAGCTTTGCTCCAAGAGGATCAAGAGAGTGGGAATGAGTGAGAGA
GCAAAGGGTTGGGTATATCTAAGTTAGTTCACCAATGATTTAACCCTTCT
ACTCATGCTAGCAGCCTATATCTGAGTTCATCCTCAGTTTTAAACATATT
TTCCATGTTTAATCAGCAAGTATTTATTCAAATAAAATGCTTGATATTTA
TCCAGAAGGGTGTCATGAGTTAAATAACTAAGTCAAAACCTGTCTGCCCT
TCCCAAGTATTTTTTAAGGACTTCTTGTCTTTAAAATTGCACATATGGAA
GATGGACTATATGCAGATGAGTGCTGGTGCCTGCAAAGCCCAAAGAAGAA
GTCATATATTCTAAGCCTAGAAATTCAAGTAGCTGTAATCCACCTGATAT
AGGTGCTAGGAATTGAGCCCAAGTCTTCTGCATGAATACTATGTACTCTC
ACTCAACTCTTCATCCCCCAAGGCTACATCTTGCTTACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no294_n03.b1 MSMg01no294_n03.b1 CHROMAT_FILE:
MSMg01no294_n03.b1 PHD_FILE: MSMg01no294_n03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:35 2005
         (648 letters)



>mm_chr11_28536387_28537434
          Length = 1048

 Score = 1160 bits (600), Expect = 0.0
 Identities = 633/644 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctggaaaatgactaaacaaaggtaatcatttagcaacattgaaagaattgaaact 64
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 848 gaattctggaaaaggactaaacaaaggtaatcatttagcaacattgaaagaattgaaact 789

                                                                       
Query: 65  gataatttagaagcttaatgtgagatgcccaaacagcaattggaacagtaaatggactgt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 788 gataatttagaagcttaatgtgagatgcccaaacagcaattggaacagtaaatggactgt 729

                                                                       
Query: 125 acaaagtctagctggggagagatagaagcataaagacaaaactagttagcatctccccca 184
           |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 728 acaaagtctagctggggagaaatagaagcataaagacaaaactagttagcatctccccca 669

                                                                       
Query: 185 ggccacctcttcctcagagcagaatagaaagcaaaacccccacagttccagtcctgccac 244
            |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 cgccacctcttccccagagcagaatagaaagcaaaacccccacagttccagtcctgccac 609

                                                                       
Query: 245 acagtgttagcaaggaagtcagagcaggtcacagtatttctaattcagattaatgacccc 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 608 acagtgttagcaaggaagtcagagcaggtcacagtatttctaattcagattaatgacccc 549

                                                                       
Query: 305 attcagccctgtctccttagcaggaaattaggaagcagaggaaggagcaggagtgattca 364
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 548 attcagccctgtctccttagcaggaaattaggaagcagaggaagaagcaggagtgattca 489

                                                                       
Query: 365 taacccatggttctggctattggcagttgtgctcgttaaaagcaaagacattgttttaat 424
           |||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 488 taacccgtggttctggctattggcagttgtgctcattaaaagcaaagacattgttttaat 429

                                                                       
Query: 425 attaaaaaatcgagtctgacttatttataggatgaagtgttctccatcacatttataaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 attaaaaaatcgagtctgacttatttataggatgaagtgttctccatcacatttataaag 369

                                                                       
Query: 485 gcagctggttacatacccatatttttgaaggacaggagaactaatccttgctcctttgtg 544
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 gcagctggttacctacccatatttttgaaggacaggagaactaatccttgctcctttgtg 309

                                                                       
Query: 545 tttgtctcagctataaagggaagtttgggtgaaagataatgcatgttgtgtttttctagt 604
           |||||||||||||||||| |||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 308 tttgtctcagctataaagtgaagtttgggtgaaagataatggatgttgtgtttttctggt 249

                                                       
Query: 605 acttagctattgactctacatctcttctgcccatcatggtctct 648
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 248 acttagctattgactctacatctcttctgcccatcatggtctct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 648
Length of database: 1048
Length adjustment: 10
Effective length of query: 638
Effective length of database: 1038
Effective search space:   662244
Effective search space used:   662244
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no294_n03.g1 MSMg01no294_n03.g1 CHROMAT_FILE:
MSMg01no294_n03.g1 PHD_FILE: MSMg01no294_n03.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:30:35 2005
         (288 letters)



>mm_chr11_28382639_28383326
          Length = 688

 Score =  524 bits (271), Expect = e-153
 Identities = 283/287 (98%)
 Strand = Plus / Plus

                                                                       
Query: 2   ctaaatcctctggaagaaagaagaattcctgtactcaaaagaatcttacccttggaagcc 61
           ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct: 202 ctaaatcctctggaagaaagaagaattcctgtactcaaaggaatcttatccttggaagcc 261

                                                                       
Query: 62  aggcagcagcgtacttgagcacgtgacagcatagctgtggtttgacatcagtgtttctct 121
           |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 262 aggcagcagcgtacttgagcacgtgacagcatagctgtggtttggcatcagtgtttctct 321

                                                                       
Query: 122 tctatccaagcattaccatttagtacagctcaagcatactcctccaaaactcaaggtcag 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 tctatccaagcattaccatttagtacagctcaagcatactcctccaaaactcaaggtcag 381

                                                                       
Query: 182 ctttgctccaagaggatcaagagagtgggaatgagtgagagagcaaagggttgggtatat 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 ctttgctccaagaggatcaagagagtgggaatgagtgagagagcaaagggttgggtatat 441

                                                          
Query: 242 ctaagttagttcaccaatgatttaacccttctactcatgctagcagc 288
           |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 442 ctaagttagttcaccaatgatttagcccttctactcatgctagcagc 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space:   189441
Effective search space used:   189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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