BAC Information

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BAC

Clone NameMSMg01-295P01
Chromosome11 (Build37)
Map Location 32,806,107 - 32,990,577
singlet/doubletdoublet
Overlap geneLOC670035, LOC432548
Upstream geneCpeb4, 4930524B15Rik, Nsg2, LOC669207, Il9r, 3300001G02Rik, Rhbdf1, Mpg, Mare, Hba-x, Hba-a1, F830116E18Rik, Hbq1, Sh3pxd2b, Ubtd2, 1700007I06Rik, Stk10, Fbxw11, LOC666616, 1700008A04Rik, LOC666620
Downstream geneFgf18, Npm1, LOC666646, Tlx3, Ranbp17, LOC666258, Anp32c, LOC669306, LOC666269, Gabrp, D130052B06Rik, Kcnip1, Kcnmb1, Lcp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-295P01.T7 (MSMg01no295_p01.b1)MSMg01-295P01.TJ (MSMg01no295_p01.g1)
ACCAG423689AG423690
length743739
length of high quality
(start - end)
235 (128 - 362)343 (76 - 418)
definitionCHROMAT_FILE: MSMg01no295_p01.b1 PHD_FILE: MSMg01no295_p01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:00 2005CHROMAT_FILE: MSMg01no295_p01.g1 PHD_FILE: MSMg01no295_p01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:00 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(32,990,344 - 32,990,577)(32,806,107 - 32,806,449)
sequence
TCTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCCAGAATGTGGCTTTCATTGNGGAGAAAGTGCAACAAAAGCAAAA
AATGTGAATCGTGGTCCTTCTTAGCACCCCACCCCACTCCCAAACCAAAG
CTTGGATCATGTCATGATTTTACAGATATTCACTGAGTGAGTGAATACGT
GGGCTAGTCAGAAACTACAGAGAAATCCACGGAGGGCCATGGAAGGTGAC
AGGTGGTGACAGGGAGGGCTACCTCACTAACAGTACCCAGTGCCTGAACG
AAAGGACAGAGGCAGGCCAAGTGGTAGCCCTGGGTTGAAGATTCAAGACT
AGGATTGCAAGACAGTGTCTTTTTCAGATCCCCTGCCCAGGCTCAGCTTC
TTTGAGAGTCTTCTTTCCCTGCACACCCTCTTACAGATGTTGGTTTGGTC
TCCCAGTCACCAGCCCACCATCCACAGTTACCCAGCACTGTGCTGAACCT
CAGGGCATGTCCTCATGAAGTGTGCGTGTGTGCTTGCGCGTGCATGTATG
TGTGCACGTCTGACTAATGAGTCCTCTGGTTAAGCGGCAACATGCTGGTG
AGTCCTCTGTACTGCTTATGGACCTGTTTGGAGATTATGTTATAATAGTC
CTTTTGACTGTCTTCTGTTCCTACATCTTCCAGTAATACAGTATATCGCC
CTCGTTTTCCTATTTATTCCACGCGATACATTGATTACCTATA
CAATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTATTTTGCAACCAAATGGATCTGAA
CTGATGACCAGGCCTGTTGTAGCTCCCAATGTGGGAAGCAGGAGGGGGGT
ATGGTTTGAATAATCTCTGACAGAGCAAACAGAAGGTAGTATGACAACAA
TCAGAACTTCCCACACTCTCAGGCTGTATGAAAGTGACATTGGATCAAAA
ATAGAAACATCACATAGTATAAACTTCTAGCCCCCAAGGTTTGCTCAGTG
TCCTGTTTAATCCCCTAAGGTACCCCCATGATTCTTGAGGCCTCTTCCTA
GGAACTGACCCCCATGATTTTGTGAAGCTGATACACTACTGATACAACCT
TCACAAATGAACAGACTCACCACCTGGTATAGACAGCTGGTCTACCTCAC
GCTGGTAGTGGAGCTGTGCCTGCCATGGCTGGGCTCCTGTGTGCTGCGAG
TTTACCTCCTGGGAGGGTTTGTTTTGCGTCTCACCTTGTCTAGGCCACTT
TATTGCAGACATGGCCTATTATAACTCTGATAGACTTTGGTTGAAGCCAG
CACAACCGCTTGTACTCCTGTGGATTCCACAGCTGGATTCCTGACATCCC
TGTCCTGTAATTTTGAAAACCTTGCGAATAATTAACCCTTATTTTTACCG
CATCTTCCCCTGCCTATTTTTATTTTTTGTTCTTCTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no295_p01.b1 MSMg01no295_p01.b1 CHROMAT_FILE:
MSMg01no295_p01.b1 PHD_FILE: MSMg01no295_p01.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:00 2005
         (235 letters)



>mm_chr11_32990143_32990777
          Length = 635

 Score =  429 bits (222), Expect = e-125
 Identities = 231/234 (98%)
 Strand = Plus / Minus

                                                                       
Query: 2   ccaccccactcccaaaccaaagcttggatcatgtcatgattttacagatattcactgagt 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 ccaccccactcccaaaccaaagcttggatcatgtcatgattttacagatattcactgagt 376

                                                                       
Query: 62  gagtgaatacgtgggctagtcagaaactacagagaaatccacggagggccatggaaggtg 121
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gagtgaatacgtgggccagtcagaaactacagagaaatccacggagggccatggaaggtg 316

                                                                       
Query: 122 acaggtggtgacagggagggctacctcactaacagtacccagtgcctgaacgaaaggaca 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 acaggtggtgacagggagggctacctcactaacagtacccagtgcctgaacgaaaggaca 256

                                                                 
Query: 182 gaggcaggccaagtggtagccctgggttgaagattcaagactaggattgcaaga 235
           |||||||| |||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 255 gaggcaggtcaagtggtagccctgggttgaagattcaagacaaggattgcaaga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 235
Length of database: 635
Length adjustment: 9
Effective length of query: 226
Effective length of database: 626
Effective search space:   141476
Effective search space used:   141476
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no295_p01.g1 MSMg01no295_p01.g1 CHROMAT_FILE:
MSMg01no295_p01.g1 PHD_FILE: MSMg01no295_p01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:00 2005
         (343 letters)



>mm_chr11_32805907_32806649
          Length = 743

 Score =  594 bits (307), Expect = e-174
 Identities = 334/343 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tattttgcaaccaaatggatctgaactgatgaccaggcctgttgtagctcccaatgtggg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 201 tattttgcaaccaaatggatctgaactgatgaccaggcctgttgtagctaccaatgtggg 260

                                                                       
Query: 61  aagcaggaggggggtatggtttgaataatctctgacagagcaaacagaaggtagtatgac 120
           | ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcaggagaggggtatggtttgaataatctctgacagagcaaacagaaggtagtatgac 320

                                                                       
Query: 121 aacaatcagaacttcccacactctcaggctgtatgaaagtgacattggatcaaaaataga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 321 aacaatcagaacttcccacactctcaggctgtatgaaagtgacattggatcaaaaatagc 380

                                                                       
Query: 181 aacatcacatagtataaacttctagcccccaaggtttgctcagtgtcctgtttaatcccc 240
           |||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||
Sbjct: 381 aacatcacatagtataaaattctagcccccaagatttgctcagtgtcctgtttaatcccc 440

                                                                       
Query: 241 taaggtacccccatgattcttgaggcctcttcctaggaactgacccccatgattttgtga 300
           ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 441 taaggtacccccatgatccttgaggcctcttcctaggaattgacccccatgattttgtga 500

                                                      
Query: 301 agctgatacactactgatacaaccttcacaaatgaacagactc 343
           ||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 501 agctgatgcactactgatacaaccttcacaaatgaacagactc 543


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 343
Length of database: 743
Length adjustment: 9
Effective length of query: 334
Effective length of database: 734
Effective search space:   245156
Effective search space used:   245156
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)