BAC Information

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BAC

Clone NameMSMg01-296C02
Chromosome11 (Build37)
Map Location 45,886,325 - 45,886,560
singlet/doubletsinglet
Overlap geneAdam19
Upstream geneLOC382510, LOC633082, Clint1, Lsm11, Thg1l, Sox30, LOC667037, LOC100039624
Downstream gene9530066K23Rik, Cyfip2, C030019I05Rik, LOC100038833, LOC100039577, Itk, OTTMUSG00000005491, Crsp9, LOC100039730, Havcr2, LOC210535, LOC675689, LOC435256, BC053393, Dppa1, EG237749, Timd2, LOC620678, Havcr1, Timd4, Sgcd
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296C02.T7 (MSMg01no296_c02.b1)MSMg01-296C02.TJ (MSMg01no296_c02.g1)
ACCAG423828AG423829
length731724
length of high quality
(start - end)
347 (108 - 454)239 (125 - 363)
definitionCHROMAT_FILE: MSMg01no296_c02.b1 PHD_FILE: MSMg01no296_c02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:15 2005CHROMAT_FILE: MSMg01no296_c02.g1 PHD_FILE: MSMg01no296_c02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTCCTATATTCCAGAGGACCGCGGAATTCTTTCCAATCGCTCAAACAAAA
CCCTCACCATGTATGTGATGGAAACAGCTTCTCAACTTCATTATTTTCGA
CAACAATTTTCCCCTTGACAATGCCTTTTGAGGAAAGCTCATTTTATATT
TTGCCAGAGTCGAATTTATTCATCTTATTATTTTACAGTATGCCAATGAG
GACTCTAAGAAATCCTTACATGGTCTCAAGTCGCAAAGACTTTTCCCTCT
GGTCTTCCAGCCTTGCCCACTCTGTATTTGGAATTATTCTGAGCCCTTCT
TTATTGGTCTCAGTGTTTTAATGATGGGGTTGTCTGTGTGAGACACTGTG
CATGTGAGTGTCTTAGGAAGCCAGAGACATCGGAGAGCCTTGAGCTGGAG
TGGTAAGGGCAATGGTAAGCTGCCCAACATGGGTGTTTGGAATTGAACTT
GGGTCTGTAAAAGCAGTTAGTGCTCTTAACTGCTGCACCAACTCCCTACT
CCCTGTCTGGATGCTTTTTAACTTCACCTCTGGCCAGAAGCCCAGCTCTT
TGAATGCCTCTCTTATTAGTTCTCCTTCCAAACCCTTACTGCAGCCCAAC
AGTCTACTCTTTGGCTTCTGGGGATGTCCTCACCATCTGACCAGGTTTCC
TACCCCTAATTGCTATAGGTGAGCTTGCTTGTTTGTTTGATTGGTTCGAT
CTGGTTCCTTTAAAGCTTTTCAAGAAAGAAN
CATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTAGAAACATTCAGCCAGTTCAA
ACAGGACGGCACTCCTTTCCCCCCGCTTCATCCCAGCACCTTCTCAGGTG
GGGACAGATTTCAACATCTTACCTAGAGTCAAGGACACCTCACGTTGGCC
CTGTCTGGTCAGAAATTTCATCTGGTCAGAAATTCTATTGGTTGTTGGCA
AAATTCAATTTCCTGGGTCAAAGAAACGCTGGGAAAGGCTTAGCTGGCGA
CCCAGTGCCCTTAGGAGACCTTGCTTTGCTGAGTTGCATTAAAATGAGTC
ACAGGCATATTTATTACATTTCACTTACCATACACATGGCCCAAGAAATT
AAAGGATAGCGTACTTTAACCAAGTATTTGGCAGATCTCAGGTATTCCAA
ATGTTTTTGCAAAGCCTGTGTGCAGCTGGGCTCCCGGGTCCCTGCAGTTA
ATCCTGTGAGACTTGGTGCCAAGGAAGCAGCTGAGTGGCTGGGTGAGGAG
AACATAATTTAATGAGAGCTGCCTGTGGCTATCTGAAAATTTCCGCAGAC
GTATTTTTGGGTGGGAAATACGGAGAACAGAACCAGGCCTACTCCATCCA
AGGCGATGAATGGATGGATGCGTTAATATGAATTCGGAGTGCTGTTAGGC
CTTGTCCTAGCGTGACCTGGAAGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_c02.g1 MSMg01no296_c02.g1 CHROMAT_FILE:
MSMg01no296_c02.g1 PHD_FILE: MSMg01no296_c02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:15 2005
         (239 letters)



>mm_chr11_45886125_45886763
          Length = 639

 Score =  441 bits (228), Expect = e-128
 Identities = 234/236 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcttcatcccagcaccttctcaggtggggacagatttcaacatcttacctagagtcaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gcttcatcccagcaccttctcaggtggggacagatttcaacatcttacctagagtcaagg 260

                                                                       
Query: 61  acacctcacgttggccctgtctggtcagaaatttcatctggtcagaaattctattggttg 120
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 acacctcactttggccctgtctggtcagaaatttcatctggtcagaaattctattggttg 320

                                                                       
Query: 121 ttggcaaaattcaatttcctgggtcaaagaaacgctgggaaaggcttagctggcgaccca 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 321 ttggcaaaattcaatttcctgggtcaaagagacgctgggaaaggcttagctggcgaccca 380

                                                                   
Query: 181 gtgcccttaggagaccttgctttgctgagttgcattaaaatgagtcacaggcatat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcccttaggagaccttgctttgctgagttgcattaaaatgagtcacaggcatat 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)