BAC Information

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BAC

Clone NameMSMg01-296D12
Chromosome11 (Build37)
Map Location 103,553,277 - 103,703,669
singlet/doubletdoublet
Overlap geneGosr2, Wnt9b, Wnt3, Nsf
Upstream geneCcdc43, Adam11, Gja7, Higd1b, Eftud2, Ccdc103, LOC100042500, Gfap, 3000004C01Rik, C1ql1, Dcakd, Nmt1, Plcd3, Acbd4, Hexim1, Hexim2, Fmnl1, 4933400C05Rik, Map3k14, Arhgap27, 5730442P18Rik, Plekhm1, Lrrc37a, Gm884, Lyzl6, Rprml
Downstream geneEG667631, Arf2, LOC100042645, Crhr1, 4933407P14Rik, Mapt, 1700081L11Rik, Cdc27, Myl4, LOC666721, EG629959, Itgb3, LOC666739, LOC629960, LOC666749, LOC632784
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296D12.T7 (MSMg01no296_d12.b1)MSMg01-296D12.TJ (MSMg01no296_d12.g1)
ACCAG423894AG423895
length715748
length of high quality
(start - end)
237 (103 - 339)242 (60 - 301)
definitionCHROMAT_FILE: MSMg01no296_d12.b1 PHD_FILE: MSMg01no296_d12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:21 2005CHROMAT_FILE: MSMg01no296_d12.g1 PHD_FILE: MSMg01no296_d12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:21 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(103,703,433 - 103,703,669)(103,553,277 - 103,553,517)
sequence
GACTCACTATTCCGAGAGGATCCGCGGAATTCTATAGTTGTCTAAAGAAA
AGGGCAAGCCGCCAGGGTAGGTGGAGAAATCCCAGCTTGGGATTGTTCCC
ACACCCAGCAACCGGATCATTAAAAAGGACTGTGAAATAGATTTCTCTAA
GAAGTAAAGATGTATGTAAGAAGTGAGAAACCTGGTTGCCTTAGTGACAG
GGACTGGCAGGGACTCTCTTTTAAGGGAACACTGGCCTGTCATTAGTCAG
AATTTGGTGACTGACCCCAGCTGCCAGGTGACCTGCTGCATCAGGGACTT
TGTGGCAGAAAGGCATTAGTCTTGGGAATATTTCTGCTTGTCGCAAGTTT
AACAGAATAAAAACATGCCTGGTCTGCATGACCTCGCTTTGCACATGCGT
CGTACATTGTACTCAGGAAAGTGAAGCCGCTTTGTAAGCTGCTCCAGTGT
TGGGAATGCTGGTGACAGCCACTTGGGCAAGCCAGTGAGTGCCCCATGGG
GTTTTCAATTTAACGTTAAAGCTAGAGGCTGAGAGTCAGGTAGAGAGTGT
GGGCCACAGAAAGCTGTTCTTCTTGGCAAGAAGACAGAATCTGTGGGCAG
CCTTCTTTAGAGAGCATCGCATCTTACCAGACAGCCGTCGTGTCTGTCGC
AGGAGCCTTAATTTCCCATTTGTTGGCATTCCAGCTTTCTAGTAGAAATA
TTGTGTGTGCTTGTG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXCAAGCAGCTAATGACTGCTGCAAGAAAGAGAGCTAGATTCT
CCCAGGGATGAGCCCCTTACTGACTGCCCAGTGCAGAGTAGTCAGCCTGG
AAACCACACAGACACCAAAAACAGCCTCAGCAGCTTGTATTTACAGATAG
TTGTGCATACGCACCCATACATTTGTATTTAACAATAATAACCAAAAAAA
GGGCATCAATTTGAAAGTAGGTCAGCATGGGAGAGGTTCAAAGGAAAGTA
TCTAGGCAGGGCTGGAAGGAGAAAAGCAAAGGGAGAAAATGATGTTTTTC
TTTTTCACCCCCCCCCCCCTCATAAAAATAATAAGACAATTTTAAAGGGT
ATGCCCAAATAATGAAAAAAAAAAGAACCCTTAGGAGAAGGGTTCTTTCA
TACTCCAAAGAAAAGAACAAGTGAATATGACTACAATAATAAAAGACAAA
CTATACTAGATGCACCCATCAACAAAGAAGCAAATACATCTATCTCTAGT
GAATATCAGGATTGATGTCTGAAATATTTATGTAAAGACACCCTTTAACT
AAGAGGAAAAGTTTAACATAGTCAATTCAAAATTGGCCACTGGCCATATT
GACAAATAAGGATCTAAGACAAAATATATTCTCAATATTAATTGATCTAT
GTTAATTGTTACTTCTGATTCCTCTATTAAAAATTATTGTAATTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_d12.b1 MSMg01no296_d12.b1 CHROMAT_FILE:
MSMg01no296_d12.b1 PHD_FILE: MSMg01no296_d12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:21 2005
         (237 letters)



>mm_chr11_103703233_103703869
          Length = 637

 Score =  458 bits (237), Expect = e-133
 Identities = 237/237 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   acccagcaaccggatcattaaaaaggactgtgaaatagatttctctaagaagtaaagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acccagcaaccggatcattaaaaaggactgtgaaatagatttctctaagaagtaaagatg 378

                                                                       
Query: 61  tatgtaagaagtgagaaacctggttgccttagtgacagggactggcagggactctctttt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tatgtaagaagtgagaaacctggttgccttagtgacagggactggcagggactctctttt 318

                                                                       
Query: 121 aagggaacactggcctgtcattagtcagaatttggtgactgaccccagctgccaggtgac 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 aagggaacactggcctgtcattagtcagaatttggtgactgaccccagctgccaggtgac 258

                                                                    
Query: 181 ctgctgcatcagggactttgtggcagaaaggcattagtcttgggaatatttctgctt 237
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 257 ctgctgcatcagggactttgtggcagaaaggcattagtcttgggaatatttctgctt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 237
Length of database: 637
Length adjustment: 9
Effective length of query: 228
Effective length of database: 628
Effective search space:   143184
Effective search space used:   143184
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no296_d12.g1 MSMg01no296_d12.g1 CHROMAT_FILE:
MSMg01no296_d12.g1 PHD_FILE: MSMg01no296_d12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:21 2005
         (242 letters)



>mm_chr11_103553077_103553718
          Length = 642

 Score =  451 bits (233), Expect = e-131
 Identities = 239/241 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   caagcagctaatgactgctgcaagaaagagagctagattctcccagggatgagcccctta 60
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caagcaactaatgactgctgcaagaaagagagctagattctcccagggatgagcccctta 260

                                                                       
Query: 61  ctgactgcccagtgcagagtagtcagcctggaaaccacacagacaccaaaaacagcctca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctgactgcccagtgcagagtagtcagcctggaaaccacacagacaccaaaaacagcctca 320

                                                                       
Query: 121 gcagcttgtatttacagatagttgtgcatacgcacccatacatttgtatttaacaataat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gcagcttgtatttacagatagttgtgcatacgcacccatacatttgtatttaacaataat 380

                                                                       
Query: 181 aaccaaaaaaagggcatcaatttgaaagtaggtcagcatgggagaggttcaaaggaaagt 240
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aaccaaaaaaagggcatcactttgaaagtaggtcagcatgggagaggttcaaaggaaagt 440

            
Query: 241 a 241
           |
Sbjct: 441 a 441


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 642
Length adjustment: 9
Effective length of query: 233
Effective length of database: 633
Effective search space:   147489
Effective search space used:   147489
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)