BAC Information

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BAC

Clone NameMSMg01-296I15
Chromosome11 (Build37)
Map Location 84,437,952 - 84,438,234
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2, Ddx52, Ap1gbp1, Dusp14, Tada2l, OTTMUSG00000000997, Acaca, LOC100043671, Aatf, Lhx1
Downstream geneMrm1, BC022224, Ggnbp2, Pigw, Znhit3, Car4, Usp32, LOC668794, LOC234848, 1700125H20Rik, Appbp2, D630032N06Rik, Ppm1d, Bcas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296I15.T7 (MSMg01no296_i15.b1)MSMg01-296I15.TJ (MSMg01no296_i15.g1)
ACCAG424124AG424125
length745847
length of high quality
(start - end)
289 (77 - 365)192 (71 - 262)
definitionCHROMAT_FILE: MSMg01no296_i15.b1 PHD_FILE: MSMg01no296_i15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:45 2005CHROMAT_FILE: MSMg01no296_i15.g1 PHD_FILE: MSMg01no296_i15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:32:45 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAATGCTAATTTGAGCACCTAGTAG
GGATTTGGATATACTCAGTGGTGCAGCATTTGCCTAGCATATAGGAGACC
CTAGGTTCTAACCCCAATAACACACACACACACATACACACACACACACA
CACACACATACACACACAGAGTGGATATGTTTTGCTACGTTGCAAGAGAC
TTCCCTTTTCTTCTTTCAAGTGCCCCAATGACCTTAGGCCCCTCTCCTCC
CTCCTCTATGCACCTCCTGCAGGATGAACAGGCAACCAGGGATCTCCCAG
AACCCAGCTTTGTTTAGACTGGACAGCTGGCGGCATGGAACCACACTGAA
TTCCCTCATATGATGGACGCAGGAGAGCACCGGGGCAGGACAAACTCAGC
TCCTCCCCTCCCCCACTCCTCCCCTCCCCACTCCTCTGCCTCTCCCCTGA
CCCCTCATAGGCCCTCTGCTTCCTCTCTTCCTCCCACCACCTCACCTCAT
CTCCTGGCCGCTTACCTCGCTCCAAACTACCTGATCAAAGGCAAGAATTT
GGGAGCCTGTAATGAGCTCCTTCTCCTCGGCTCCCTCTCCACCCGGTCCT
CTGCCCCTTCCTGCCAGGCCATATATAACTCTTTCCCCAGGGGAGCCCGG
ATGGATGGGAGATGAAGGCCCTGCATCCGCTCCCTGATGTTACGG
CGATGCAGTGGGAGGCCTGGCGGCCGCCTGTTTCAGACTGGAGGTGAACT
ATAGAAGTTTCGCGAAATTCATGCTAATTTGAGCACCTAGTAGGGATTTG
GATATACTCAGTGGTGGAGCATTTGCCTAGCATATAGGAGACCCTAGGTT
CTAACCCCAATAACACACACACACACATACACACACACACACACACACAC
ATACACACACAGAGTGGATATGTTTTGCTACGTTGCAAGAGACTTCCCTT
TTCTTCTTTCAAGGGCCCAAGAGACTAGACCCCCCCCCCCCCCCCATCTC
TATGCACCTCCTGCAGATAGACAGGCCACCAGGATTTTCCCAAAACCCCC
CTTTTGTAAAAACTGTCAAAATTTGGGGCAGGGAAACACCCCGAAATTTC
TCCCCCCTAAGGGGGGGGGGGTGAAAACCCCCGGCGGGGGAAAAAAAAAA
AACAAATATTCTCCCTCCCTCTCCCACCTCATTATCTTTTCTCAAATCTA
TTGTTGCCTCCCCCTCGCCGGTCTTCATACATCCTAGATCCTGTCGCGTA
AATATATTTTCTGTCTAACCACACCCCATCCGCGTTTTATTTCTCCAATT
ACTTACATTTTTTATTTTTCGGACCCAGGTTTCAACCCCAAGCGTACTAT
ACCACCCCCCCTTCTTACTCTATGTAATCTCTCTCAATCTTCGCGAAAGC
ACTTTGCCGGCACATAAATTATTATTATCTCTTCCTCCCCTGTTTACTCG
CGTGTGGTCCGCGGACCCACCTATCCATACCTTATTGTATACCTTTTCTC
TCAGAGATACTTCTATTCTATAATCAACCCCACCCCTTAGAGTTATN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_i15.b1 MSMg01no296_i15.b1 CHROMAT_FILE:
MSMg01no296_i15.b1 PHD_FILE: MSMg01no296_i15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:45 2005
         (289 letters)



>mm_chr11_84437610_84438298
          Length = 689

 Score =  493 bits (255), Expect = e-144
 Identities = 278/287 (96%), Gaps = 4/287 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatgctaatttgagcacctagtagggatttggatatactcagtggtgcagcatttgccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 625 aatgctaatttgagcacctagtagggatttggatatactcagtggtggagcatttgccta 566

                                                                       
Query: 61  gcatataggagaccctaggttctaaccccaataacacacacacacacatacacacacaca 120
           |||||||||||||||||||||||||||||||||||||||||||||||  ||||| |||||
Sbjct: 565 gcatataggagaccctaggttctaaccccaataacacacacacacac--acacatacaca 508

                                                                       
Query: 121 cacacacacacatacacacacagagtggatatgttttgctacgttgcaagagacttccct 180
           |||||||||||  ||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct: 507 cacacacacac--acacagacagagtgaatatgttttgctacgttgcaagagacttccct 450

                                                                       
Query: 181 tttcttctttcaagtgccccaatgaccttaggcccctctcctccctcctctatgcacctc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 tttcttctttcaagtgccccaatgaccttaggcccctctcctccctcctctatgcacctc 390

                                                          
Query: 241 ctgcaggatgaacaggcaaccagggatctcccagaacccagctttgt 287
           |||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 389 ctgcaggatgaacaggcaaccagggatctctcagaacccagctttgt 343


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)