Query= MSMg01no296_j07.b1 MSMg01no296_j07.b1 CHROMAT_FILE:
MSMg01no296_j07.b1 PHD_FILE: MSMg01no296_j07.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:48 2005
(616 letters)
>mm_chr11_96594861_96595876
Length = 1016
Score = 1081 bits (559), Expect = 0.0
Identities = 600/619 (96%), Gaps = 11/619 (1%)
Strand = Plus / Minus
Query: 4 ggaattcagaatgttgaccagggtggtctcaaaatcagagatcggcatgcctctgtctcc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 693 ggaattcagaatgttgaccagggtggtctcaaaatcagagatcggcatgcctctgtctcc 634
Query: 64 caagggtcaccacgcccaccacagtgttttcttaatgaagggctatggatttaacttggt 123
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 633 caagggtcaccacgcccaccacagtgttttcttaatgaagggctatggatttaacttggt 574
Query: 124 agtagaccatccagggcctagcatgcataaggccttggatttgatcctcagcactg-taa 182
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||
Sbjct: 573 agtagaccatccagggcctagcatgcataaggccctggatttgatcctcagcactgttaa 514
Query: 183 gttttactttgagagggataaaccagttgtacctatgggggtgaagacaagacaggtggc 242
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 gttttactttgagagggataaaccagttgtacctatgggggtgaagacaagacaggtggc 454
Query: 243 ggttggaatgcttgtcgatcaaatggagcaagtcattaaagctgcactagaatgctgggt 302
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 ggttggaatgcttgtcgatcaaatggagcaagtcattaaagctgcactagaatgctgggt 394
Query: 303 ggatttctcga-----ttttttttgccaccccccccccactgtgttcagaatgaaagtat 357
||||||||||| ||||| || | |||||||||||||||||||||||||
Sbjct: 393 ggatttctcgagcagc-----tttgcaacatcaggcccactgtgttcagaatgaaagtat 339
Query: 358 ctagggtgggagaaacaactccctcattttacaggtgaggaaacaattccatggagctga 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ctagggtgggagaaacaactccctcattttacaggtgaggaaacaattccatggagctga 279
Query: 418 gctgcacagctgtgtcgtgcatcctgcagggagacattcggcagggttctagacagaggc 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 gctgcacagctgtgtcgtgcatcctgcagggagacattcggcagggttctagacagaggc 219
Query: 478 ctttcttgctcagccaagaggctactggcctttgcagggaagaaatagggagtactccag 537
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 218 ctttcttgctcagccaagaggctactggcctttgcagggaagaaatacggagtactccag 159
Query: 538 acaccattctctcggactaaactcagtgtgcgtcagtttgttctcttgctccaggtatgg 597
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 acaccattctctcggactaaactcagtgtgcgtcagtttgttctcttgctccaggtatgg 99
Query: 598 gaggcagttttattccagc 616
|||||||||||||||||||
Sbjct: 98 gaggcagttttattccagc 80
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 616
Length of database: 1016
Length adjustment: 10
Effective length of query: 606
Effective length of database: 1006
Effective search space: 609636
Effective search space used: 609636
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no296_j07.g1 MSMg01no296_j07.g1 CHROMAT_FILE:
MSMg01no296_j07.g1 PHD_FILE: MSMg01no296_j07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:32:48 2005
(296 letters)
>mm_chr11_96436553_96437249
Length = 697
Score = 522 bits (270), Expect = e-153
Identities = 282/286 (98%), Gaps = 1/286 (0%)
Strand = Plus / Plus
Query: 1 tctaaacctgttttgtactttcccaagtgaaagagcagaaccactttgagcgcctccttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctaaacctgttttgtactttcccaagtgaaagagcagaaccactttgagcgcctccttt 260
Query: 61 cggaactctacctactggtcctgtatcctggggctctccctgctctctccctgctcagtg 120
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cggaactctacctaatggtcctgtatcctggggctctccctgctctctccctgctcagtg 320
Query: 121 ggatgcctggacctaggatggcatcacaggataagtggccacggatgatgtcacagtcct 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggatgcctggacctaggatggcatcacaggataagtggccacggatgatgtcacagtcct 380
Query: 181 ccacttcctaaaggcttacctcagtgcacgtggataaagacc-accttaccaagttcagc 239
||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||
Sbjct: 381 ccacttcctaaaggcttacctcagtgcacgtggataaagtcccaccttaccaagttcggc 440
Query: 240 tgcacacatctttcccccttttacatttgcttggggctttggattt 285
||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgcacacatctttcccccttttacatttgcttggggctttggattt 486
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 697
Length adjustment: 9
Effective length of query: 287
Effective length of database: 688
Effective search space: 197456
Effective search space used: 197456
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
