BAC Information

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BAC

Clone NameMSMg01-296O13
Chromosome11 (Build37)
Map Location 114,964,172 - 114,964,437
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC634710, 4932435O22Rik, Rpl38, Ttyh2, Dnaic2, Kif19a, 1500005I02Rik, Gpr142, Gprc5c, Cd300a, Cd300lb, Cd300c, 4732429D16Rik, Cd300d, LOC629970, LOC100043123, LOC100043125, Clm3, Cd300e
Downstream geneCd300lf, Rab37, Slc9a3r1, Nat9, Tmem104, Grin2c, Fdxr, Fads6, Otop2, Ush1g, Otop3, C630004H02Rik, Cdr2l, Ict1, Atp5h, Kctd2, 4933422H20Rik, Slc16a5, Armc7, Nt5c, Hn1, Sumo2, Nup85, Gga3, Mrps7, Mif4gd, Slc25a19, Grb2, LOC100043184, 2310067B10Rik, Caskin2, Tsen54, Llgl2, Recql5, 2210020M01Rik, Sap30bp, Itgb4, Galk1, H3f3b, Unk, Unc13d, Wbp2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-296O13.T7 (MSMg01no296_o13.b1)MSMg01-296O13.TJ (MSMg01no296_o13.g1)
ACCAG424390AG424391
length779722
length of high quality
(start - end)
288 (76 - 363)149 (76 - 224)
definitionCHROMAT_FILE: MSMg01no296_o13.b1 PHD_FILE: MSMg01no296_o13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:13 2005CHROMAT_FILE: MSMg01no296_o13.g1 PHD_FILE: MSMg01no296_o13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:33:13 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTCATGTCCTGTAATAACGTC
TGCGTTATGATGGTAGGTTATGTGCCCTGCTAACGGTTGTAGGGGCATTT
CGAGGGGCATGACCAAGGACAGACAGTCAGCTAAGGACTAAGGCAGTTGT
GACAAAAGCCTGGGTTTAGTGTCTTCTTCTTTTCTTTTTTTTTTCTTTTT
TTCTTTTTTTGGTTTTTTGAGACAGGGTTTCTCTGTATAGCCCTGGCTGT
CCTGGAACTTACTTTGTAGACCAGGCTGGCCTCGAGTGCCGGGACTAAAG
GCATGCGCCACCTTTCCTTGTTTTAGCGCCCCCCCCACCTGTAGTTCTTT
TTGCCAGCAAGCTGCCTGACACCCCCCTGGAGAAAAACAGACGGAGTAGG
GGTACGGGGTGTGGGGTGNNATATTTCTTTTTTTTTTCTCTTTCTTTTCA
TTCTCTCTCCTCCTTTCTTTTCGTGACTTTTCCCCTTTCTTATTTTTCCT
TCTTTTTAATTCATTTCCACCGGTTTTTATTTTATAATTTTCCCTTTTTT
TTTTCTCCCCCGCCCTTTTTCCGCCCCGCCCTCTTCGTTTCGCCTTTTTT
TTTCCCCCTCTTCTTCTGCTTCCTTTTTTTCCCTTTCCCCCTCCGTCCCC
CTCTCTTCTCTCCTCTTATACCCTTTATCCCACTTTCACCCTTCCCCTAT
TCTTCTCCCCTTTCCTTAATTATTTCCTT
TCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTTCATGTCCTGTAATAACGTC
TGCGTTATGATGGTAGGGATGCGCTCTGCTAACGGTTGTAGGGGCATTTC
NGAGGGGCATGACCAAGGACAGACAGTCAGCTAAGGACTAAGGCAGTTGT
GACAAAAGCCTGGGTTTAGTGTCTTCTTCNTTTTCCTTTTTTTTTTTTTC
CTTTTTTTTTTCCCTTTTTTTTTTGGGGGGNTTTTTTTTGGAAAAAAAAA
AAGGGGGGGTTTTTTCCCCCCCCCCCGTGTGGGAAGAAAAATAATACCTA
GCCCCCCCCTCGTGGTGTTTGTGTGGCCCCCCTGCCCGCGGAGGGAATAA
CCCCCCACAACCACTCTCTTTTTGTTTTTGTTGTATAAAAAAAAATTATC
TTTATCGGGGTCGGGTGCGCCCCCCCCCCAATAAAAGGGGGCGGGGGGGG
CGGCCGTTTTCATTATTTCTTAAAATAAAATATCACATGGTTTTTCGCTG
TTGTGTTTTTTATCATCCCCTTACCACAATCTCTCACTCCCTACCCCTCT
CTCTTCTTTCCCATATTAATCACTATATTGGGTATGTTTTTACATATTTC
ATGCCTCGCCCCACCTCTCCTTCTTTACTTTCTTTCCCCTTTTTTTTTTT
TTTTACCCCCCCCTATTGTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no296_o13.b1 MSMg01no296_o13.b1 CHROMAT_FILE:
MSMg01no296_o13.b1 PHD_FILE: MSMg01no296_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:33:13 2005
         (288 letters)



>mm_chr11_114964095_114964777
          Length = 683

 Score =  377 bits (195), Expect = e-109
 Identities = 256/287 (89%), Gaps = 21/287 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttcttcatgtcctgtaataacgtctgcgttatgatggtaggttatgtgccctgctaacg 60
           ||||||||||||||||||||||||||| ||||||||||||||  |||||| |||||||||
Sbjct: 343 cttcttcatgtcctgtaataacgtctgtgttatgatggtagg-gatgtgctctgctaacg 285

                                                                       
Query: 61  gttgtaggggcatttcgaggggcatgaccaaggacagacagtcagctaaggactaaggca 120
           ||||||||||||||||||||||||||||||||    |||||||||||| |||||||||||
Sbjct: 284 gttgtaggggcatttcgaggggcatgaccaag----gacagtcagctagggactaaggca 229

                                                                       
Query: 121 gttgtgacaaaagcctgggtttagtgtcttcttcttttcttttttttttctttttttctt 180
           ||||||||||||| ||||||||||||           |||||||||    ||||||| ||
Sbjct: 228 gttgtgacaaaagtctgggtttagtg-----------tcttttttt----ttttttt-tt 185

                                                                       
Query: 181 tttttggttttttgagacagggtttctctgtatagccctggctgtcctggaacttacttt 240
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 tttttggtttttcgagacagggtttctctgtatagccctggctgtcctggaacttacttt 125

                                                          
Query: 241 gtagaccaggctggcctcgagtgccgggactaaaggcatgcgccacc 287
           |||||||||| |||| ||||||||| ||| |||||||||||||||||
Sbjct: 124 gtagaccaggttggcttcgagtgccaggattaaaggcatgcgccacc 78


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 683
Length adjustment: 9
Effective length of query: 279
Effective length of database: 674
Effective search space:   188046
Effective search space used:   188046
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)