BAC Information

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BAC

Clone NameMSMg01-297O16
Chromosome11 (Build37)
Map Location 58,099,329 - 58,100,028
singlet/doubletsinglet
Overlap gene4930438A08Rik
Upstream geneGria1, LOC667878, 1810073G14Rik, Mfap3, Galnt10, Sap30l, Hand1, LOC624605, Larp1, LOC676527, LOC667947, Cnot8, Gemin5, Mrpl22, Irgb10, Igtp, LOC263305, LOC100041816, EG668249
Downstream geneZfp692, Zfp672, 1700047K16Rik, Sh3bp5l, 2210415F13Rik, LOC624814, 1810065E05Rik, OTTMUSG00000005737, 4930504O13Rik, Olfr30, Olfr333-ps1, Olfr332, Olfr331, Olfr330, Olfr329, Olfr328, Olfr327-ps1, Olfr325, Olfr324, 2210407C18Rik, Olfr323, Trim58, Olfr216, OTTMUSG00000005755, Olfr320, LOC668058, Olfr319, Olfr318, Olfr317, Olfr316, Olfr315, Olfr314, 3100002J23Rik, Olfr313, Olfr312, GA_x5J8B7W3UM0-1747565-1747342, Olfr311, 2810021J22Rik, Zfp39, Butr1, Rnf187, LOC676691, Hist3h2ba, Hist3h2bb, Hist3h2a, LOC382523, Trim17, Trim11, Obscn, A230051G13Rik, 4930543L23Rik, Gja12, Guk1, Mrpl55, 2310033P09Rik, Arf1, Wnt3a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-297O16.T7 (MSMg01no297_o16.b1)MSMg01-297O16.TJ (MSMg01no297_o16.g1)
ACCAG425111AG425112
length747758
length of high quality
(start - end)		704 (44 - 747)80 (76 - 155)
definitionCHROMAT_FILE: MSMg01no297_o16.b1 PHD_FILE: MSMg01no297_o16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:28 2005CHROMAT_FILE: MSMg01no297_o16.g1 PHD_FILE: MSMg01no297_o16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:28 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGCCGCGGA
ATTCAACTGATTCCCCATGCACACCTTTGATAGACTCTCAGAGGAAAGGT
CTGATCTGCCTTTCCCACAGCTGAGCCAGAACTGATAGAACTATGTCAGA
AAACAAGTTCAGAACACAGGCTCACTGCGGGAGGCATACTCTAACTTCAG
GGAGCCATGTCCATCTCTTATAGGCAGCCCTGTGATGATCCATTGGGACT
TGGGAACCTGGTGATCTATCATATACATTTTGGGGACTATTTGTTATATA
AGGTTTCAGGCTCCTGATGTTTGGTCTTCCACAGTGGCTTAGCTAAGGGT
CGTCTCATGACAGACAGTCTATCTACCTCAAATAGTGGTAGAAATGGAAA
AAAGCCAATGTAGCACCCAGGTCTACGTCATCTGTGTGCATGGCAATCCC
ACTGACTGAAGGGAAGGAAGGTGACTTGGGCAGACATTCAGCCTGTGTCA
TTCCCTGAGTGAGAGGCTTTGGTACCTGAGGGGCATTTGCGGGCCAGCAG
GAAGAGTGGCAGGTAAACTTGGGAGGACCCGTGACTAAGGCTCTCTTTGG
TAGGGCAGTGCCCGGTACGTTGAGTCATAGGTCCAGTGATAAATCTTCCT
CAGATCAAGGGTTATGGCCAGTCCTCCTTCATCCCTAGGCATTTGCTTAC
TTGCCCTATCCACAGCTATGTTCCCAGGCTGGCTGGCTCTCATCTTC

NGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTTGCATGATTGTTTTCTCTTCTC
TCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTC
TCTCTCTCTCTCGCGCGCGCTCGCGCGCTCTCTCATACACATACACACAC
ACACACAGAGAGAGAGAGTCATACAGATAAGCATGCAATGCACACATAGG
AAGGAACGTGGGACAGACATTGAAGTGGACATGTATACATCAACTCTAAA
ATCCCACCAAGGGAAGGAAATTCTTGGTGGAAGAAGGGGGGAAAACACTG
CTGTATCAAGCAGGAGTGACCCGAGATCCCAAATGGGATGTTGACCTCTC
AAGAGCGTGGAAAGCCCCCACAAATAGAGAAGGGGGAGGCTCAACAAGCA
AACGTGATTACCTATGTAAACACCTTGGTATGGGCCCCAACAGTGATCCG
AATTCTATGGAGAAATATAAGAAAAAGGAACAGGACTTCACCTCAGATAA
ACTTCAGTCTGGAAGGAGGGGTGTTCAAAAAAAAAAAGCGTGCGTGAAGA
GGAGAAAATCAAAACAGGAACTCTACACATGGGAGGGACTGACAGCTCTT
TGGAGAAAAAGAAGTGGGGGATGAGGGGAAAAAAGGGGGGGGGGGAGAAA
GAAAGCGTCTTTCACGCCATGTAAAGGGAAAAGGCACATCCCTCTCGAGG
CGAAGATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no297_o16.b1 MSMg01no297_o16.b1 CHROMAT_FILE:
MSMg01no297_o16.b1 PHD_FILE: MSMg01no297_o16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:28 2005
         (704 letters)



>mm_chr11_58099124_58100228
          Length = 1105

 Score = 1251 bits (647), Expect = 0.0
 Identities = 687/703 (97%), Gaps = 7/703 (0%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattcaactgattcccca---tgcacacctttgatagactctcagaggaaaggtctgat 62
           ||||||||||||   | ||   ||||||||||||||||||||||||||||||||||||||
Sbjct: 206 gaattcaactga---cacaagatgcacacctttgatagactctcagaggaaaggtctgat 262

                                                                       
Query: 63  ctgcctttcccacagctgagccagaactgatagaactatgtcagaaaacaagttcagaac 122
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 263 ccgcctttcccacagctgagccagaactgatagaactatgtcagaaaacaagttcagaac 322

                                                                       
Query: 123 acaggctcactgcgggaggcatactctaacttcagggagccatgtccatctcttataggc 182
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 acaggctcactgcgggaggcatactctaacttcagggagccatgtccatctcttataggc 382

                                                                       
Query: 183 agccctgtgatgatccattgggacttgggaacctggtgatctatcatatacattttgggg 242
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 383 agccctgtgatgatccattgggacttgggaacctgatgatctatcatatacattttgggg 442

                                                                       
Query: 243 actatttgttatataaggtttcaggctcctgatgtttggtcttccacagtggcttagcta 302
           ||||||||||||||||||||||||||||| ||| |||||||||||||| |||||||||||
Sbjct: 443 actatttgttatataaggtttcaggctcccgatctttggtcttccacaatggcttagcta 502

                                                                       
Query: 303 agggtcgtctcatgacagacagtctatctacctcaaatagtggtagaaatggaaaaaa-g 361
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 503 agggtcgtctcatgacagacagtctatctacctcaaatagtggtagaaatggaaaaaaag 562

                                                                       
Query: 362 ccaatgtagcacccaggtctacgtcatctgtgtgcatggcaatcccactgactgaaggga 421
           ||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 ccaatgtggtagccaggtctacgtcatctgtgtgcatggcaatcccactgactgaaggga 622

                                                                       
Query: 422 aggaaggtgacttgggcagacattcagcctgtgtcattccctgagtgagaggctttggta 481
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 623 aggaaggtgacttgggcagacattcagcctgtgtcattccctgagtgagaggctttggta 682

                                                                       
Query: 482 cctgaggggcatttgcgggccagcaggaagagtggcaggtaaacttgggaggacccgtga 541
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 683 cctgaggggcatttgcgggccagcaggaagagtggcaggtaaacttgggaggacccgtga 742

                                                                       
Query: 542 ctaaggctctctttggtagggcagtgcccggtacgttgagtcataggtccagtgataaat 601
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 743 ctaaggctctctttggtagggcagtgcccggtacgttgagtcataggtccagtgataaat 802

                                                                       
Query: 602 cttcctcagatcaagggttatggccagtcctccttcatccctaggcatttgcttacttgc 661
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 803 cttcctcagatcaagggttatggccagtcctccttcatccctaggcatttgcttacttgc 862

                                                      
Query: 662 cctatccacagctatgttcccaggctggctggctctcatcttc 704
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 863 cctatccacagctatgttcccaggctggctggctctcatcttc 905


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 704
Length of database: 1105
Length adjustment: 10
Effective length of query: 694
Effective length of database: 1095
Effective search space:   759930
Effective search space used:   759930
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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