BAC Information

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BAC

Clone NameMSMg01-298A05
Chromosome11 (Build37)
Map Location 89,870,717 - 89,871,343
singlet/doubletsinglet
Overlap genenone
Upstream geneTrim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047, 4932411E22Rik, Ankfn1, Pctp
Downstream geneTmem100, LOC100039104, Mmd, Hlf, Stxbp4, LOC100039267, Cox11, Tom1l1, LOC638903
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298A05.T7 (MSMg01no298_a05.b1)MSMg01-298A05.TJ (MSMg01no298_a05.g1)
ACCAG425179AG425180
length740740
length of high quality
(start - end)
631 (46 - 676)300 (330 - 629)
definitionCHROMAT_FILE: MSMg01no298_a05.b1 PHD_FILE: MSMg01no298_a05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:36 2005CHROMAT_FILE: MSMg01no298_a05.g1 PHD_FILE: MSMg01no298_a05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:34:36 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAGAAGATCCGCGG
AATTCAGTGACTATACCCCACAATACGAGGAGAGAACTGATTGGCTTACA
TATATGTACACCAACTGACACCCACACGTATGTCATGGCATATACACACA
TCATACAAACACACAACTCTTGAAATGAATAGTACCTTTTAAGAGATGGA
TGGTTCCTGAGGAGCAACATCTGAGTTTGACCTTTAACTTACCCACATAC
GTGCATACCGACAGACACTCAACATGCAAACATGCCTCCACAAACACCTG
TTCCCACACATGTATGCATGTTCTCAAACAAAAGATTTATGCCTATTGAT
TAGAGAAGAAAGATGTGGAGGGGAAAATGAGTGGCAGCAGAGAGGGAAAA
GACTCCATCTCTTTTAGATGAAATAGAAGTGAAATAGTTAGAAAATTCCC
ATATCTCACCCTCAATGTTTTGTTCGACTTAGGAAAGGATCTTCAACAGA
GGCTAAGCTGTTATATGAAACATTGGAGGTTATTATATCAATCGCCTCAA
AGGACTGCCCACAGATTTCTTAAGACATGCACACAGGAATGTGTAACTCT
ATGGAGAAATGTGGTCATCTCTCCATACCTGATCAAAGATCAGTAGTTTC
CCAAATAATATGACAACTATCATTAAGGTTCCCCTGAATTACACAATGAG
AGGTTGACAACATCATCTAAACATTGTTTTTTATTTTTTN
CATTGATXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGCACTGGAGGTGAA
CTATAGAAGGTTTCGAGAAAATCCTCTTCTGGCACAAATATCTTGGCTGA
GCCACCCCGACTCTCCTATCGTCTTTATTTCCTCTCCTGTGTTGAGAAAA
CCTTCAGGAGAGGTTGCTCACGGGCGCTATTTAGTCTGAAGATAAAAAGA
GGATGTGGGTTGAGGCATTATCAGCCTCTTCAGGCTTCTCCTGACTGCAG
TACCAAGAAACGCCCATTGGAGGGCGAGAGTGAGCAGAGTACTGTTCCTT
TGGAAAAGCCATCTCCCACCCTTTTTTTGCTCAACAATTCATAACTCATT
TACTGGGTTTTAAAAAACACTTTGGATTGAGTTGGGGAGATGGCTCAAAA
ATTTGGTAAAGTTCTTGTCACATAAGCACGAGGACCCACATCAGATTCCC
AGCATCCACGTAACTAAAGAGCCGTGCGCAGCAATTTGTGCCTGTTAATC
CAGAGCTGGGAAGACAGAGACAGCAGGATCCCTAGCCAGGAGCTTGCTGA
CCAGTCAGGCTGTATGGATCAATGAGCTTTTAGCTCAGTGAGAGATGCTG
CCTAGGAAAATTAAGATGGAGGATATTGAGCAAGATACCTGAAGACAAGC
TCTGAACTCTTCATACAGGAACACGCATATCCACTCACATGCTTTTCCCG
TGCAATAAGCTAGCCTGCGTGGACACAGCCCCTCTAGACA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_a05.b1 MSMg01no298_a05.b1 CHROMAT_FILE:
MSMg01no298_a05.b1 PHD_FILE: MSMg01no298_a05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:34:36 2005
         (631 letters)



>mm_chr11_89870513_89871543
          Length = 1031

 Score = 1181 bits (611), Expect = 0.0
 Identities = 623/627 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtgactataccccacaatacgaggagagaactgattggcttacatatatgtac 64
           |||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgacaagaacccacaatacgaggagagaactgattggcttacatatatgtac 264

                                                                       
Query: 65  accaactgacacccacacgtatgtcatggcatatacacacatcatacaaacacacaactc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 accaactgacacccacacgtatgtcatggcatatacacacatcatacaaacacacaactc 324

                                                                       
Query: 125 ttgaaatgaatagtaccttttaagagatggatggttcctgaggagcaacatctgagtttg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ttgaaatgaatagtaccttttaagagatggatggttcctgaggagcaacatctgagtttg 384

                                                                       
Query: 185 acctttaacttacccacatacgtgcataccgacagacactcaacatgcaaacatgcctcc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 acctttaacttacccacatacgtgcataccgacagacactcaacatgcaaacatgcctcc 444

                                                                       
Query: 245 acaaacacctgttcccacacatgtatgcatgttctcaaacaaaagatttatgcctattga 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 acaaacacctgttcccacacatgtatgcatgttctcaaacaaaagatttatgcctattga 504

                                                                       
Query: 305 ttagagaagaaagatgtggaggggaaaatgagtggcagcagagagggaaaagactccatc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ttagagaagaaagatgtggaggggaaaatgagtggcagcagagagggaaaagactccatc 564

                                                                       
Query: 365 tcttttagatgaaatagaagtgaaatagttagaaaattcccatatctcaccctcaatgtt 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 tcttttagatgaaatagaagtgaaatagttagaaaattcccatatctcaccctcaatgtt 624

                                                                       
Query: 425 ttgttcgacttaggaaaggatcttcaacagaggctaagctgttatatgaaacattggagg 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 ttgttcgacttaggaaaggatcttcaacagaggctaagctgttatatgaaacattggagg 684

                                                                       
Query: 485 ttattatatcaatcgcctcaaaggactgcccacagatttcttaagacatgcacacaggaa 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttattatatcaatcgcctcaaaggactgcccacagatttcttaagacatgcacacaggaa 744

                                                                       
Query: 545 tgtgtaactctatggagaaatgtggtcatctctccatacctgatcaaagatcagtagttt 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 tgtgtaactctatggagaaatgtggtcatctctccatacctgatcaaagatcagtagttt 804

                                      
Query: 605 cccaaataatatgacaactatcattaa 631
           ||||||||||| |||||||||||||||
Sbjct: 805 cccaaataataggacaactatcattaa 831


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 631
Length of database: 1031
Length adjustment: 10
Effective length of query: 621
Effective length of database: 1021
Effective search space:   634041
Effective search space used:   634041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)