BAC Information

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BAC

Clone NameMSMg01-298G11
Chromosome11 (Build37)
Map Location 118,143,800 - 118,144,319
singlet/doubletsinglet
Overlap geneUsp36
Upstream geneSept9, EG667423, Tnrc6c, Tmc6, Tmc8, 6030468B19Rik, Syngr2, Tk1, Afmid, Birc5, LOC546519, Tha1, Socs3, Pgs1, Dnahc17, Pscd1
Downstream geneTimp2, Ddc8, Lgals3bp, Cant1, C1qtnf1, D230014K01Rik, D11Bwg0517e, Enpp7, Cbx2, Cbx8, Cbx4, Tbc1d16, Ccdc40, Gaa
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298G11.T7 (MSMg01no298_g11.b1)MSMg01-298G11.TJ (MSMg01no298_g11.g1)
ACCAG425464AG425465
length740800
length of high quality
(start - end)
612 (37 - 648)54 (303 - 356)
definitionCHROMAT_FILE: MSMg01no298_g11.b1 PHD_FILE: MSMg01no298_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:05 2005CHROMAT_FILE: MSMg01no298_g11.g1 PHD_FILE: MSMg01no298_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:05 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXTTCAAGAGGATGCCGCGGAATTCTCTG
AATGTCCTCCTGTTGTATCACGTGACACAGGACGTGCTGTCAGAAGTTGC
TCGTTTTCCTGTCTGGATGGTCAGGTGGTTAGCTGTAGTTAGTTACCACA
TCAGTGGCATGAAAGAGCCTGGGAAACGGGCAGTGACATTAATTACACTT
TGCGTCAGTGAGGGCCTCATCCTTCTCATGGTGCACAGCAGGACTGGACC
AAGGTTCTAGACCATGACCTTGCACGTATGTCCTGTGAGGTACAGAGGAG
CATGGGCGACAGCCTCACCACCTCCAGAAGACGGTGCTAGAAAAGAAGAC
GACATTCTTGTAGCTTAGAAACAGCCTTCTAGCCAGCCATACCATGCACG
CCTTTAATGCAGCTCTCAGGAGGCAGAGGCCTCTCGGGATCTCTGTGAGT
TCAAGGACAGTCTGGTCAACATAGTGATTCCAGGCCAGTGAGGACTACAC
AGTCAACACCAAAGGGCTGGAGAGATGGCTCAGCAGTGAAGAGCACTGAC
TGCTCCTCCAGGGGTCCTGAGTTCAATTCCTAACAACCACATGTTGGCTT
ACAACCATCTGCAATGGGATCAGATGCCCTCTTTTGGTGTGTCTGAAGAC
AGCAACAGTGTACTCGTACATGTTAAATAAATAAATAAATCATAAATGAA
AGCGAGCATGCAGTGTTCCTGTGTGGGCCACTAAACCCAN
AGAGAGGGNAANANNNNNACCACCTNNCCNCCNCAANNNNNNNACGATGA
TAGGGGGAGCCGGGNGGNNGCCTGTTTCCGCACCCGCNNNGANNNANNGA
AGTTTCCAAGCACAAGAGAGGGNANGGGNGGNNNGNNNNNNNAGAAGGGA
GAGGAAGAGAGGAGGCCGAGNGGCNAGAGGCGGCCACGGNGGCNGAGAGG
CCCAGGCCCCACGAGCCCACAGGNACCNNAAAGAAAAGCNCCAGGNGGGC
ACAGCAGAAGCCGNAGGCNGGGAAGAGCCCCNGGAGGACGCNCACCTTTT
GGGAGATGTTGCCCAGGACCTCCTCGATCTCCCCCTGCAGGCCCTTCAGC
ACCTCGNCCGTTTTTTTTTTTGTCCCAGNCNACACAGAGGGAAAGACGGG
CATTCTTTTTCCCCCCTGACCGCGACATCTGGAGGACATCCCTCCTGGAG
TGATCTGGACACATGGAAGAAGGCCTGTCCTCCCAAGACTCCTCTCCTGT
TCAGGCTACAGAAGACTAGGGGTCATCAGACATGGGAGACATATGGAGTC
TTCTTGCTCCTATGGATAGGCTACAAGCAGGATTATTTCTTCTTTTAGAT
TTATTCACCACACGCAAGNCACCAGTACCTGTTTTCTTACCCACCACAAG
AGGGGTGCCAGAGCTCCTTACGCCAGGTTGTCGACCCCCCCGGGCGCGTT
TTTTTTTTTTTTTTAAGACCCCCTGGGAAAGTATCACGGGGCCCCTCCCA
ATTGATCCATTCTCCCCTAGCCCCCTAAGGGGGGGAACCCCGAATATGCG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_g11.b1 MSMg01no298_g11.b1 CHROMAT_FILE:
MSMg01no298_g11.b1 PHD_FILE: MSMg01no298_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:05 2005
         (612 letters)



>mm_chr11_118143800_118144811
          Length = 1012

 Score =  922 bits (477), Expect = 0.0
 Identities = 513/531 (96%), Gaps = 12/531 (2%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctctgaatgtcctcctgttgtatcacgtgacacaggacgtgctgtcagaagttgc 64
           |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 gaattctctgaagggcctcctgttgtatcacgtgacacaggacgtgctgtcagaagttgc 461

                                                                       
Query: 65  tcgttttcctgtctggatggtcaggtggttagctgtagttagttaccacatcagtggcat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 tcgttttcctgtctggatggtcaggtggttagctgtagttagttaccacatcagtggcat 401

                                                                       
Query: 125 gaaagagcctgggaaacgggcagtgacattaattacactttgcgtcagtgagggcctcat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 400 gaaagagcctgggaaacgggcagtgacattaattacactttgcgtcagtgagggcctcat 341

                                                                       
Query: 185 ccttctcatggtgcacagcaggactggaccaaggttctagaccatgaccttgcacgtatg 244
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 340 ccttctcatggtgcacagcaggactggaccaaggttctagaccatgacgttgtacgtatg 281

                                                                       
Query: 245 tcctgtgaggtacagaggagcatgggcgacagcctcaccacctccag-aagacggtgcta 303
           ||||||||||| |||||||||||||| |||||||||||||||||| | ||||||||||||
Sbjct: 280 tcctgtgaggtccagaggagcatgggtgacagcctcaccacctcc-gtaagacggtgcta 222

                                                                       
Query: 304 gaaaagaagacgacattcttgtagcttagaaacagccttctagccagccataccatgcac 363
           |||||||||||||||          |||||||||||||||||||||||||||||||||||
Sbjct: 221 gaaaagaagacgaca----------ttagaaacagccttctagccagccataccatgcac 172

                                                                       
Query: 364 gcctttaatgcagctctcaggaggcagaggcctctcgggatctctgtgagttcaaggaca 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 171 gcctttaatgcagctctcaggaggcagaggcctctcgggatctctgtgagttcaaggaca 112

                                                                       
Query: 424 gtctggtcaacatagtgattccaggccagtgaggactacacagtcaacaccaaagggctg 483
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 111 gtctggtcaacatagtgattccaggccagtgaggactacacagtcaacaccaaagggctg 52

                                                              
Query: 484 gagagatggctcagcagtgaagagcactgactgctcctccaggggtcctga 534
           |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 51  gagagatggctcagcagtgaagagcactgactgctcctccaggggtcctga 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 612
Length of database: 1012
Length adjustment: 10
Effective length of query: 602
Effective length of database: 1002
Effective search space:   603204
Effective search space used:   603204
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)