Query= MSMg01no298_g15.b1 MSMg01no298_g15.b1 CHROMAT_FILE:
MSMg01no298_g15.b1 PHD_FILE: MSMg01no298_g15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:06 2005
(196 letters)
>mm_chr11_19642321_19642916
Length = 596
Score = 356 bits (184), Expect = e-103
Identities = 193/196 (98%)
Strand = Plus / Plus
Query: 1 gagcctttgtttagagaagaggaaagactggaacacagaagtggaaagaagactggccca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gagcctttgtttagagaagaggaaagactggaacacagaagtggaaagaagactggccca 260
Query: 61 tcttcttgctcaagcagttgtctccactgcctctttcctctggcagggggcagaagcact 120
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 261 tcttcttgctcaagcagttgtctccaccgcctctttcctctggcagggggcagaagcact 320
Query: 121 ttacctcttttgtgaagagctcaggctaacttgaaccaaatgggggtgtaattcacctca 180
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttacctctcctgtgaagagctcaggctaacttgaaccaaatgggggtgtaattcacctca 380
Query: 181 gtggcaaagagcatgc 196
||||||||||||||||
Sbjct: 381 gtggcaaagagcatgc 396
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 196
Length of database: 596
Length adjustment: 8
Effective length of query: 188
Effective length of database: 588
Effective search space: 110544
Effective search space used: 110544
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no298_g15.g1 MSMg01no298_g15.g1 CHROMAT_FILE:
MSMg01no298_g15.g1 PHD_FILE: MSMg01no298_g15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:06 2005
(493 letters)
>mm_chr11_19807674_19808565
Length = 892
Score = 818 bits (423), Expect = 0.0
Identities = 476/495 (96%), Gaps = 5/495 (1%)
Strand = Plus / Minus
Query: 1 agttttctgactccacacctttatcaaggggagtagcttcccccctcatcctcagctcct 60
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 574 agttttctgactccacacctttatcaaggggagtagcttcccctctcatcctcagctcct 515
Query: 61 ttattccccatcaccacccacactctctgtggccagaagccatcagatgaggttcagaga 120
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 514 ttattccccatcaccacccacactcactgtggccagaagccatcagatgaggttcagaga 455
Query: 121 acctggtctccctcacttatctccagtccacactcgttcacctgccaccagcctggaaga 180
|||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||
Sbjct: 454 acctggtctccctcacttatctccagaccacacttgttcacctgccaccagcctggaaga 395
Query: 181 agtgccaggtcttcaatcctgctgccaccatcagcactttgagctcaggtctgctggtga 240
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 394 agtgccaggtcttcaatcctgctgccaccatcagcactttgagct-aggtctgctggtga 336
Query: 241 acagagtatacacagggctactcccagcactcagggtccttagtggttacagaacaaggc 300
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 335 acagagtagacacagggctactcccagcactcagggtccttggtggttacagaacaaggc 276
Query: 301 tgtgctgagagtcctaagtgcacattgtttgtagttggttccttttcccataattgcttt 360
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 275 tgtgctgagagtcctaagtgcacattgtttgtagttggttccttttcccatagttgcttt 216
Query: 361 gcttttacacattaaaaaggtttaaacaaagccgggcatggtggcgcactcctttaatcc 420
|||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||
Sbjct: 215 gcttttacacattaaaaaggtttaaacaaagctgggcatggtagcacactcctttaatcc 156
Query: 421 cagcacttgggaggcagaggtaggcagatttctgagtttgagaccagcctggtctactaa 480
|||||||||||||||||||| ||| |||||||||||| |||||||||||||||||| |
Sbjct: 155 cagcacttgggaggcagaggcaggtggatttctgagttcgagaccagcctggtctac--a 98
Query: 481 gag--agttccagga 493
||| ||||||||||
Sbjct: 97 gagtgagttccagga 83
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 493
Length of database: 892
Length adjustment: 10
Effective length of query: 483
Effective length of database: 882
Effective search space: 426006
Effective search space used: 426006
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
