Query= MSMg01no298_j16.b1 MSMg01no298_j16.b1 CHROMAT_FILE:
MSMg01no298_j16.b1 PHD_FILE: MSMg01no298_j16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:20 2005
(292 letters)
>mm_chr11_70334119_70334810
Length = 692
Score = 526 bits (272), Expect = e-154
Identities = 287/292 (98%), Gaps = 1/292 (0%)
Strand = Plus / Minus
Query: 1 actatgaaagtactattttagaagaaagcattagaaacagtctgaagctgacaccgtgtg 60
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 654 actatgaaagtactattttagaagaaagcattagaaacagtctgaagctgata-ggtgtg 596
Query: 61 ctatgcctagttgacatccaaatggaaatgccaaatatccagctggatggatagaaatat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 595 ctatgcctagttgacatccaaatggaaatgccaaatatccagctggatggatagaaatat 536
Query: 121 atagttcagaaaaaaagtagatttgaggtacgtttgggagttagtctaagttagtctagg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 atagttcagaaaaaaagtagatttgaggtacgtttgggagttagtctaagttagtctagg 476
Query: 181 aaatgctttatgtctttcacattcactagtacggaagtgaccaaggagacctttgtggag 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 475 aaatgctttatgtctttcacattcactagtacggaagtgaccaaggagacctttgtggag 416
Query: 241 tgcctgtttggtgatatgcatggtgcacgggctttaggttggagacagaaca 292
|||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 415 tgcctgtttggtgagaggcatggtgcacgggctttaggttggagacagaaca 364
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space: 193289
Effective search space used: 193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no298_j16.g1 MSMg01no298_j16.g1 CHROMAT_FILE:
MSMg01no298_j16.g1 PHD_FILE: MSMg01no298_j16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:20 2005
(603 letters)
>mm_chr11_70164511_70165513
Length = 1003
Score = 1083 bits (560), Expect = 0.0
Identities = 592/608 (97%), Gaps = 10/608 (1%)
Strand = Plus / Plus
Query: 1 catttggcctgagccagggtttctacaggatggtctccagggagaaacctggatttggag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttggcctgagccagggtttctacaggatggtctccagggagaaacctggatttggag 260
Query: 61 aggcggggttggtgagagagaatgaaatcagagaagacacgaggcagagtccatggagag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcggggttggtgagagagaatgaaatcagagaagacacgaggcagagtccatggagag 320
Query: 121 cgtagaggctgaaaggaccagcgccttcatgaagctagggcccccagcgccttcatgaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtagaggctgaaaggaccagcgccttcatgaagctagggcccccagcgccttcatgaag 380
Query: 181 ctagggcccagagagccgtggggactgggagccaaacaggaccaggtcccgagggaccga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagggcccagagagccgtggggactgggagccaaacaggaccaggtcccgagggaccga 440
Query: 241 gaataagccttaggcttggcagttcgtagggaagaagctggagacactgggaggttttaa 300
|| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 441 gagtaagccagaggcttggcagttcgtagggaagaagctggagacactgggaggctttat 500
Query: 301 cgggcagactgttctacagtaggaacgagagaagatggtaaatc-----cccccctttaa 355
| |||||||||||||||||||||||||||||||||||||||||| | |||||
Sbjct: 501 caggcagactgttctacagtaggaacgagagaagatggtaaatcttaagc-----tttaa 555
Query: 356 aaaattagagacattcgggcagctgacactgctgatactggcactactactgtaccgcag 415
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 556 aaaattagagacattcgggcagctgacactgctgatactggcactactactgtaccgcag 615
Query: 416 agttctgtgaagtgagggacgcacagaaatatcccactcaatgaggccaggaggcagcaa 475
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 616 agttctgtgaagtgagggacgcacagaaatatcccactcaatgaggccaggaggcagcaa 675
Query: 476 ctgttactgagcgctcaccgaatgcctctgtgcaccctttccgctttccgaggctgtgag 535
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 676 ctgttactgagcgctcaccgaatgcctctgtgcaccctttccgctttccgaggctgtgag 735
Query: 536 ctccttcctcagagttcaggggccacgcatcagggttcctagggatttctttgactttgc 595
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 736 ctccttcctcagagttcaggggccacgcatcagggttcctagggatttctttgactttgc 795
Query: 596 ccccgccc 603
||||||||
Sbjct: 796 ccccgccc 803
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 603
Length of database: 1003
Length adjustment: 10
Effective length of query: 593
Effective length of database: 993
Effective search space: 588849
Effective search space used: 588849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
