BAC Information

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BAC

Clone NameMSMg01-298K17
Chromosome11 (Build37)
Map Location 70,164,711 - 70,334,514
singlet/doubletdoublet
Overlap geneAlox15, LOC668466, Pelp1, Arrb2, Med11, Cxcl16, Zmynd15, Tm4sf5, Vmo1, C730027E14Rik
Upstream geneChd3, Cyb5d1, Lsmd1, Tmem88, Jmjd3, Dnahc2, Efnb3, Wdr79, LOC100043030, Trp53, Atp1b2, Shbg, Sat2, LOC382532, Fxr2, Sox15, Mpdu1, Cd68, Eif4a1, Senp3, Tnfsf12-tnfsf13, Tnfsf13, Tnfsf12, LOC100041994, Polr2a, Amac1, Zbtb4, Chrnb1, Fgf11, Tmem102, 4933402P03Rik, 1700095G12Rik, Nlgn2, 1810027O10Rik, Plscr3, Tnk1, LOC432576, Kctd11, Centb1, 2810408A11Rik, 0610025P10Rik, Gps2, Eif5a, Ybx2, Slc2a4, LOC668442, Cldn7, Rai12, Dullard, Gabarap, Phf23, Dvl2, Acadvl, Dlg4, Asgr1, Asgr2, Mgl2, Mgl1, Slc16a11, Slc16a13, Bcl6b, 0610010K14Rik, D11Bwg0434e, Alox12, Alox12e
Downstream genePsmb6, Pld2, Mink1, Chrne, LOC668433, Gp1ba, Slc25a11, Rnf167, Pfn1, Eno3, Spag7, Camta2, AI842396, Kif1c, LOC668488, Zfp3, A430084P05Rik, Rabep1, LOC668461, Nup88, Rpain, C1qbp, Dhx33, Derl2, Mis12, 6330403K07Rik, LOC382536, Nlrp1a, Nlrp1b, Nlrp1c, LOC100043249, 9230020A06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298K17.T7 (MSMg01no298_k17.b1)MSMg01-298K17.TJ (MSMg01no298_k17.g1)
ACCAG425660AG425661
length755755
length of high quality
(start - end)		425 (331 - 755)609 (74 - 682)
definitionCHROMAT_FILE: MSMg01no298_k17.b1 PHD_FILE: MSMg01no298_k17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:24 2005CHROMAT_FILE: MSMg01no298_k17.g1 PHD_FILE: MSMg01no298_k17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(70,334,091 - 70,334,514)(70,164,711 - 70,165,318)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCCGAGCTGCGCGGA
ATTCCTTACTGATTCCAAGAGACAATGAAAGTACTATTTTAGAAGAAAGC
ATTAGAAACAGTCTGAAGCTGATAGGTGTGCTATGCCTAGTTGACATCCA
AATGGAAATGCCAAATATCCAGCTGGATGGATAGAAATATATAGTTCAGA
AAAAAAGTAGATTTGAGGTACGTTTGGGAGTTAGTCTAAGTTAGTCTAGG
AAATGCTTTATGTCTTTCACATTCACTAGTACGGAAGTGACCAAGGAGAC
CTTTGTGGAGTGCCTGTTTGGTGTTTATTTATGGTGCACGGGCTTTAGGT
TGGAGACAGAACACAGAAATAAATGTACTTTTGGTGGAGGGAAGTAGCAC
TCAGGCGGGACATGCTGTGTTGGCTGTGTGGAGGGCAGATCTGGACTGAG
ACTTGGTAAGAGCTGGCAACTGAAGCCATGGAGCAGCTGAAATGAGCTCA
GGGGAATATGAGTCCTTCAGATGCAAAGAGCAGGGATAACAGGTCTTCCC
ACACCCTCCCCCAGCCCTTAAGCTAGCTCTCCAGTTATCATACATAACGC
CAGATGTCGACAGCTACTAAAGCATTTTTTATTCTTCATTGCTTCTTCCA
GCTTCCAGAGGCTGAAGATGAGAGGATCTCACACATCACTGAGACTGCCC
TGCTGGGGGTGGGCCTTAACTGTGGTGACTTCACTAAAGAGGACCGCTAG
CTACN

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCATTTGGCCTGAGCCAGGGTTTCTACA
GGATGGTCTCCAGGGAGAAACCTGGATTTGGAGAGGCGGGGTTGGTGAGA
GAGAATGAAATCAGAGAAGACACGAGGCAGAGTCCATGGAGAGCGTAGAG
GCTGAAAGGACCAGCGCCTTCATGAAGCTAGGGCCCCCAGCGCCTTCATG
AAGCTAGGGCCCAGAGAGCCGTGGGGACTGGGAGCCAAACAGGACCAGGT
CCCGAGGGACCGAGAATAAGCCAGAGGCTTGGCAGTTCGTAGGGAAGAAG
CTGGAGACACTGGGAGGCTTTAACGGGCAGACTGTTCTACAGTAGGAACG
AGAGAAGATGGTAAATCTTAAGCTTTAAAAAATTAGAGACATTCGGGCAG
CTGACACTGCTGATACTGGCACTACTACTGTACCGCAGAGTTCTGTGAAG
TGAGGGACGCACAGAAATATCCCACTCAATGAGGCCAGGAGGCAGCAACT
GTTACTGAGCGCTCACCGAATGCCTCTGTGCACCCTTTCCGCTTTCCGAG
GCTGTGAGCTCCTTCCTCAGAGTTCAGGGGCCACGCATCAGGGTTCCTAG
GGATTTCTTTGACTTTGCCCCCGCCCCCGCCTCCAGTCCCTCACCCTGCC
GCCTCCCGGGACAGCCAGAGCTCTGCGCAGCTCATCGAGTTCCGACAGGT
TCGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_k17.b1 MSMg01no298_k17.b1 CHROMAT_FILE:
MSMg01no298_k17.b1 PHD_FILE: MSMg01no298_k17.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:24 2005
         (425 letters)



>mm_chr11_70333891_70334715
          Length = 825

 Score =  789 bits (408), Expect = 0.0
 Identities = 420/424 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atggtgcacgggctttaggttggagacagaacacagaaataaatgtacttttggtggagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 624 atggtgcacgggctttaggttggagacagaacacagaaataaatgtacttttggtggagg 565

                                                                       
Query: 61  gaagtagcactcaggcgggacatgctgtgttggctgtgtggagggcagatctggactgag 120
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 564 gaagtagcactcaggcgggacatgctgcgttggctgtgtggagggcagatctggactgag 505

                                                                       
Query: 121 acttggtaagagctggcaactgaagccatggagcagctgaaatgagctcaggggaatatg 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 acttggtaagcgctggcaactgaagccatggagcagctgaaatgagctcaggggaatatg 445

                                                                       
Query: 181 agtccttcagatgcaaagagcagggataacaggtcttcccacaccctcccccagccctta 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 agtccttcagatgcaaagagcagggataacaggtcttcccacaccctcccccagccctta 385

                                                                       
Query: 241 agctagctctccagttatcatacataacgccagatgtcgacagctactaaagcatttttt 300
           ||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||
Sbjct: 384 agctagctctccagttatcatacataacgccggatgtcgacagctactaaagcattcttt 325

                                                                       
Query: 301 attcttcattgcttcttccagcttccagaggctgaagatgagaggatctcacacatcact 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 attcttcattgcttcttccagcttccagaggctgaagatgagaggatctcacacatcact 265

                                                                       
Query: 361 gagactgccctgctgggggtgggccttaactgtggtgacttcactaaagaggaccgctag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagactgccctgctgggggtgggccttaactgtggtgacttcactaaagaggaccgctag 205

               
Query: 421 ctac 424
           ||||
Sbjct: 204 ctac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 425
Length of database: 825
Length adjustment: 9
Effective length of query: 416
Effective length of database: 816
Effective search space:   339456
Effective search space used:   339456
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no298_k17.g1 MSMg01no298_k17.g1 CHROMAT_FILE:
MSMg01no298_k17.g1 PHD_FILE: MSMg01no298_k17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:24 2005
         (609 letters)



>mm_chr11_70164511_70165519
          Length = 1009

 Score = 1152 bits (596), Expect = 0.0
 Identities = 605/608 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   catttggcctgagccagggtttctacaggatggtctccagggagaaacctggatttggag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catttggcctgagccagggtttctacaggatggtctccagggagaaacctggatttggag 260

                                                                       
Query: 61  aggcggggttggtgagagagaatgaaatcagagaagacacgaggcagagtccatggagag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aggcggggttggtgagagagaatgaaatcagagaagacacgaggcagagtccatggagag 320

                                                                       
Query: 121 cgtagaggctgaaaggaccagcgccttcatgaagctagggcccccagcgccttcatgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cgtagaggctgaaaggaccagcgccttcatgaagctagggcccccagcgccttcatgaag 380

                                                                       
Query: 181 ctagggcccagagagccgtggggactgggagccaaacaggaccaggtcccgagggaccga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctagggcccagagagccgtggggactgggagccaaacaggaccaggtcccgagggaccga 440

                                                                       
Query: 241 gaataagccagaggcttggcagttcgtagggaagaagctggagacactgggaggctttaa 300
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 441 gagtaagccagaggcttggcagttcgtagggaagaagctggagacactgggaggctttat 500

                                                                       
Query: 301 cgggcagactgttctacagtaggaacgagagaagatggtaaatcttaagctttaaaaaat 360
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 caggcagactgttctacagtaggaacgagagaagatggtaaatcttaagctttaaaaaat 560

                                                                       
Query: 361 tagagacattcgggcagctgacactgctgatactggcactactactgtaccgcagagttc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tagagacattcgggcagctgacactgctgatactggcactactactgtaccgcagagttc 620

                                                                       
Query: 421 tgtgaagtgagggacgcacagaaatatcccactcaatgaggccaggaggcagcaactgtt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgtgaagtgagggacgcacagaaatatcccactcaatgaggccaggaggcagcaactgtt 680

                                                                       
Query: 481 actgagcgctcaccgaatgcctctgtgcaccctttccgctttccgaggctgtgagctcct 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 actgagcgctcaccgaatgcctctgtgcaccctttccgctttccgaggctgtgagctcct 740

                                                                       
Query: 541 tcctcagagttcaggggccacgcatcagggttcctagggatttctttgactttgcccccg 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcctcagagttcaggggccacgcatcagggttcctagggatttctttgactttgcccccg 800

                   
Query: 601 cccccgcc 608
           ||||||||
Sbjct: 801 cccccgcc 808


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 609
Length of database: 1009
Length adjustment: 10
Effective length of query: 599
Effective length of database: 999
Effective search space:   598401
Effective search space used:   598401
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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