BAC Information

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BAC

Clone NameMSMg01-298L17
Chromosome11 (Build37)
Map Location 89,254,276 - 89,254,900
singlet/doubletsinglet
Overlap gene4932411E22Rik
Upstream geneMsi2, LOC100038945, Akap1, Scpep1, OTTMUSG00000001305, 2210409E12Rik, Coil, LOC100039051, Trim25, Dgke, A930013B10Rik, Gm525, LOC100039114, Nog, LOC100039047
Downstream geneAnkfn1, Pctp, Tmem100, LOC100039104, Mmd, Hlf
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-298L17.T7 (MSMg01no298_l17.b1)MSMg01-298L17.TJ (MSMg01no298_l17.g1)
ACCAG425704AG425705
length751768
length of high quality
(start - end)
545 (36 - 580)625 (77 - 701)
definitionCHROMAT_FILE: MSMg01no298_l17.b1 PHD_FILE: MSMg01no298_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:29 2005CHROMAT_FILE: MSMg01no298_l17.g1 PHD_FILE: MSMg01no298_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:35:29 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXTCAAAGAGGAGCGCGGAATTCCGGCAT
TACAACAAATGGTTCACTGAAGGCAGTAGGCCTGGGCTGAGCCAGGAGTA
AGACTTCTGACGTGCTTTAGTTTGACCTTGGGCCTTGTGCAAGCTTAGGG
TTTCTACTGCTGTGATAAATGATTAAACACTGTGACCAAACAAACGCAAT
TTGAGGGAGAAAGGCTTTTTTTTTTTTGGTTGTTGTTTCCTTTTCTTTTT
CTTCATCTCACAGCTTATAGTCTAACATCCTAGGTGTCTGGACAGGAACC
CAAATTGTTATACTGAAGGCAGGAACTAATGCAGAGGACTTGGAAGAATG
CTGTTTACTGGCTTGCTCCAAGGTTTGCAAAGCCTACTTCCTTCTGCACT
GTGCTCTGGAGTGCTACTACTCAAGGACCTGTGCCCGCCCACACAAACCA
TCAATCAAGAAAACATCCCCACAGATTGTCTACAGGTTGGTCTTGCGGAG
GCATCTTCTCAATTAAGATTCCCCTTTCCCAGATAAGTCTAGGTTTGTGT
CAAGTTGAGAAAAATCAATCAGTACACGAGGAGGCAGGTAGCAGGTTACT
CCAGGGCTCTAATGGTGAGACATGTAGATGCATCTCCATCCACTTAAACT
CAGTGCTTTTAACTTGGATGCACAAACTGGCTGGAAATTATAAGGACCAC
CTGTCCTTGGGGCTTGCCGGCATGGGGCAAGAAAGAGAGATGGCTTTCTC
T
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATTTTAAAATACCATGAAAACGT
TTTATTAGAATTGCTTTATTTTTCCCGTGTTTTTTAAGAAGTAGACTATT
CAATATATAGTGCTGTGAAAATTGGCTATCCTTTCAGAAAAATAAATAGG
AGTCTTATTTATTACACACTCCATATATAGAAATAAATTCCATATGGTTA
AATTCAGTAAACAAATCCCAGAATATTAGAAAGCAATATATTTGTAAGTC
TGTCTGTATGCCAAAGCCTTTCTATTTGAGACATACACTTAGAAAGAGGT
GGTCGATATATTTGATATAAATTCTTTGTAAAATGTTTTCAGAATTAACA
TGTACATTATTCACCAAGCAGCTACTGTGGGTTTGTCACTATGGGAAACC
CAATGAACATTAGACATCACTTGCCATCAAAAATGTATAACATCATTGAG
GAAAAAGATACCAACAGCTATTGCATGGAATGACAAATATAGAACCAATT
TTTAGCTCACTCAGGTCTATTATGTATACCTTGAGATGGTTTCTGCCTCA
CTTTTTGTTGTTTCTTTCTTCTTTTGGCCTTTTTCTTCTTAAAAATTGTC
AATATATTGAATGTTTATATTTATAATCACTAGCTTTTAGTCTTCCCAAA
TAAGTTCCAATATCGTCATCACTTACAGATAAAGAAACTGAAGTTCAAAG
GAGTAGTTTTTCCCAGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no298_l17.g1 MSMg01no298_l17.g1 CHROMAT_FILE:
MSMg01no298_l17.g1 PHD_FILE: MSMg01no298_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:29 2005
         (625 letters)



>mm_chr11_89254076_89255100
          Length = 1025

 Score = 1170 bits (605), Expect = 0.0
 Identities = 620/625 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tattttaaaataccatgaaaacgttttattagaattgctttatttttcccgtgtttttta 60
           ||||||||||||||||||||||||||||||||||||||||||  ||||| ||||||||||
Sbjct: 825 tattttaaaataccatgaaaacgttttattagaattgctttaaatttccagtgtttttta 766

                                                                       
Query: 61  agaagtagactattcaatatatagtgctgtgaaaattggctatcctttcagaaaaataaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 agaagtagactattcaatatatagtgctgtgaaaattggctatcctttcagaaaaataaa 706

                                                                       
Query: 121 taggagtcttatttattacacactccatatatagaaataaattccatatggttaaattca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 705 taggagtcttatttattacacactccatatatagaaataaattccatatggttaaattca 646

                                                                       
Query: 181 gtaaacaaatcccagaatattagaaagcaatatatttgtaagtctgtctgtatgccaaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 645 gtaaacaaatcccagaatattagaaagcaatatatttgtaagtctgtctgtatgccaaag 586

                                                                       
Query: 241 cctttctatttgagacatacacttagaaagaggtggtcgatatatttgatataaattctt 300
           ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 585 cctttctagctgagacatacacttagaaagaggtggtcgatatatttgatataaattctt 526

                                                                       
Query: 301 tgtaaaatgttttcagaattaacatgtacattattcaccaagcagctactgtgggtttgt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 525 tgtaaaatgttttcagaattaacatgtacattattcaccaagcagctactgtgggtttgt 466

                                                                       
Query: 361 cactatgggaaacccaatgaacattagacatcacttgccatcaaaaatgtataacatcat 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 465 cactatgggaaacccaatgaacattagacatcacttgccatcaaaaatgtataacatcat 406

                                                                       
Query: 421 tgaggaaaaagataccaacagctattgcatggaatgacaaatatagaaccaatttttagc 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 tgaggaaaaagataccaacagctattgcatggaatgacaaatatagaaccaatttttagc 346

                                                                       
Query: 481 tcactcaggtctattatgtataccttgagatggtttctgcctcactttttgttgtttctt 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 tcactcaggtctattatgtataccttgagatggtttctgcctcactttttgttgtttctt 286

                                                                       
Query: 541 tcttcttttggcctttttcttcttaaaaattgtcaatatattgaatgtttatatttataa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 tcttcttttggcctttttcttcttaaaaattgtcaatatattgaatgtttatatttataa 226

                                    
Query: 601 tcactagcttttagtcttcccaaat 625
           |||||||||||||||||||||||||
Sbjct: 225 tcactagcttttagtcttcccaaat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 34
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 625
Length of database: 1025
Length adjustment: 10
Effective length of query: 615
Effective length of database: 1015
Effective search space:   624225
Effective search space used:   624225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)