Query= MSMg01no298_o13.b1 MSMg01no298_o13.b1 CHROMAT_FILE:
MSMg01no298_o13.b1 PHD_FILE: MSMg01no298_o13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:41 2005
(544 letters)
>mm_chr11_55281823_55282762
Length = 940
Score = 971 bits (502), Expect = 0.0
Identities = 529/542 (97%), Gaps = 8/542 (1%)
Strand = Plus / Plus
Query: 1 cacagactagtctagtttgtgtttagcatttggatcacagctcttaatataaaatgctca 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cacagactagtctagtttgtgtttagcatttggatcacagctcttaatataaaatgctca 260
Query: 61 tggtggccagaaggctcacaa--cccccccccccccgagttggggtcagcagcagactga 118
||||||||||||||||||||| ||||||| ||||||||||||||||||||||||
Sbjct: 261 tggtggccagaaggctcacaaaaccccccc------gagttggggtcagcagcagactga 314
Query: 119 ggtactactatttggaccctggagcctttatgggggaaccttaggcgtgtctgcctagga 178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ggtactactatttggaccctggagcctttatgggggaaccttaggcgtgtctgcctagga 374
Query: 179 gttgggtaaagttcccatttcagtttgaaaagcatgtgacaatggctggtggtgacgcat 238
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 gttgggtaaagttcccatttcagtttgaaaagcatgtgacaatggctggtggtgacgcat 434
Query: 239 cctataactttctcttgccagagggtgatcaaagatgggatgttgtctctgcaatcacaa 298
|||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 cctataactttcgccagccagagggtgatcaaagatgggatgttgtctctgcaatcacaa 494
Query: 299 gattggaaaacctgaaaacgtccaggagccacccgggcacgccaacttggaagccacccg 358
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 495 gattggaaaacctgaaaacgtccaggagccacccgggcacgccagcttggaagccacccg 554
Query: 359 gggacaagagcattcccaaacgccagggaggctgcctcgcggtatgctctggggtgccga 418
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 ggaacaagagcattcccaaacgccagggaggctgcctcgcggtatgctctggggtgccga 614
Query: 419 ccaagccagtttcgctgtcctcggtcgccactgcattcgtgctgagtaatgctaagggtc 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 ccaagccagtttcgctgtcctcggtcgccactgcattcgtgctgagtaatgctaagggtc 674
Query: 479 agcagctcctgctcttccgaaatgcatgcaaaaaaagttttgatgcgaagagaaaaaaac 538
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 agcagctcctgctcttccgaaatgcatgcaaaaaaagttttgatgcgaagagaaaaaaac 734
Query: 539 ca 540
||
Sbjct: 735 ca 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 544
Length of database: 940
Length adjustment: 10
Effective length of query: 534
Effective length of database: 930
Effective search space: 496620
Effective search space used: 496620
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_o13.g1 MSMg01no298_o13.g1 CHROMAT_FILE:
MSMg01no298_o13.g1 PHD_FILE: MSMg01no298_o13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:41 2005
(614 letters)
>mm_chr11_55460363_55461376
Length = 1014
Score = 1180 bits (610), Expect = 0.0
Identities = 613/614 (99%)
Strand = Plus / Minus
Query: 1 acctggcctatgactgtccagttttataaagtgcaccatctaatgaccgtgcagaccatg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 622 acctggcctatgactgtccagttttataaagtgcaccatctaatgaccgtgcagaccatg 563
Query: 61 cagtaaagtacaatgagccacaggctaggaggcagggaatttgatgacccatagtgagac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 562 cagtaaagtacaatgagccacaggctaggaggcagggaatttgatgacccatagtgagac 503
Query: 121 tccagccagctgctactctctggactcagtgcctgaaccccagcttctgtctctggaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 502 tccagccagctgctactctctggactcagtgcctgaaccccagcttctgtctctggaccc 443
Query: 181 actccctgaacccagctgattgtctctggactcagtgcttaagaacttgagtctgacttt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 442 actccctgaacccagctgattgtctctggactcagtgcttaagaacttgagtctgacttt 383
Query: 241 gttcttctattgaaatggggtgaaccacctagatcatgatttggcaatgagaccagcaca 300
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gttcttctattgagatggggtgaaccacctagatcatgatttggcaatgagaccagcaca 323
Query: 301 gcccctcacacttgaaaagatggaattgtgagaaccttagagagcatctaacaaagcagg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 gcccctcacacttgaaaagatggaattgtgagaaccttagagagcatctaacaaagcagg 263
Query: 361 ttactagtagtgtcatcctgctctcctataagctcccagaaaacaacagtagccatcaaa 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 ttactagtagtgtcatcctgctctcctataagctcccagaaaacaacagtagccatcaaa 203
Query: 421 gactccattgcacaggtaaagaaactgaggcctaaagaaatgacacagtggtgaatctca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 gactccattgcacaggtaaagaaactgaggcctaaagaaatgacacagtggtgaatctca 143
Query: 481 aagcagggttagggcagaggctagtccagaatgcaagactcagaacaccttgtttctacc 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 142 aagcagggttagggcagaggctagtccagaatgcaagactcagaacaccttgtttctacc 83
Query: 541 accaccttcttatgtttcccatatatactcaaattctggacaagaaacactcaaaccacg 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 82 accaccttcttatgtttcccatatatactcaaattctggacaagaaacactcaaaccacg 23
Query: 601 tttcacagagccct 614
||||||||||||||
Sbjct: 22 tttcacagagccct 9
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 31
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 614
Length of database: 1014
Length adjustment: 10
Effective length of query: 604
Effective length of database: 1004
Effective search space: 606416
Effective search space used: 606416
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
