Query= MSMg01no298_o14.b1 MSMg01no298_o14.b1 CHROMAT_FILE:
MSMg01no298_o14.b1 PHD_FILE: MSMg01no298_o14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:41 2005
(545 letters)
>mm_chr11_32157180_32158124
Length = 945
Score = 762 bits (394), Expect = 0.0
Identities = 430/450 (95%), Gaps = 13/450 (2%)
Strand = Plus / Minus
Query: 94 atgttcaagttagaaatgtttagttttgccgggcgtggtggcgcatgcctttaatcccag 153
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 945 atgttcaagttagaaatgtttagttttgccgggcgtggtggcgcatgcctttaatcccag 886
Query: 154 cactcgggaggcagaggcaggtggatttctgagttcgaggccagcctggtctacaaagtg 213
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 885 cactcgggaggcagaggcaggtggatttctgagttcgaggccagcctggtctacagagtg 826
Query: 214 agttccaggacagccagggctatacagagaaaccctgtttcttaaaaccaaaaaaaaaaa 273
|||||||||||||||||||||||||||| ||||||||| || |||||||||||||||||
Sbjct: 825 agttccaggacagccagggctatacagaaaaaccctgtctcaaaaaaccaaaaaaaaaaa 766
Query: 274 aaaaaaataaaagaacagaaaaaggaaaaaagaaatgtttagtttttatagcaggtgttt 333
||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 765 aaa-------------agaaaaaggaaaaaagaaatgtttagtttttatagcaggtgttt 719
Query: 334 tattgtcttattttatacttaccaagttttcaaaggatttttgtaaactttggaaacagt 393
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 718 tattgtcttattttacacttaccaagttttcaaaggatttttgtaaactttggaaacagt 659
Query: 394 aagccttgtcccttgtaattccctaagcataagttatacagttacacccttccctggcct 453
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 658 aagccttgtcccttgtaattcgctaagcataagttatacagttacacccttccctggcct 599
Query: 454 caggttactctgtctttgtgcacattacgtcatcaaacactatgtgaagttcacgaccaa 513
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 598 caggttactctgtctttgtgcacattacgtcatcaaacactatgtgaagttcacgaccaa 539
Query: 514 acaagtgtctttcatcatgaatgtgtaatg 543
||||||||||||||||||||||||||||||
Sbjct: 538 acaagtgtctttcatcatgaatgtgtaatg 509
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 545
Length of database: 945
Length adjustment: 10
Effective length of query: 535
Effective length of database: 935
Effective search space: 500225
Effective search space used: 500225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no298_o14.g1 MSMg01no298_o14.g1 CHROMAT_FILE:
MSMg01no298_o14.g1 PHD_FILE: MSMg01no298_o14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:35:41 2005
(559 letters)
>mm_chr11_32002188_32003146
Length = 959
Score = 1073 bits (555), Expect = 0.0
Identities = 558/559 (99%)
Strand = Plus / Plus
Query: 1 ttcactgctcaaggaccctgctccaccgaccactgctgtatgctccgggtgcatcctgtc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ttcactgctcaaggaccctgctccaccgaccactgctgtatgctccgggtgcatcctgtc 260
Query: 61 accctctcgcttctgccagtctttagatactgataaatcacagcagccttcagggctgtc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 accctctcgcttctgccagtctttagatactgataaatcacagcagccttcagggctgtc 320
Query: 121 ggggaaataagtggagatggttgggcaaagtgtttgacacaaagagaaggatgggccgtc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggggaaataagtggagatggttgggcaaagtgtttgacacaaagagaaggatgggccgtc 380
Query: 181 cgtcaatgcagcttccttctctcagtcacaggggcaaacttcagcctacctcttgtttgc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 cgtcaatgcagcttccttctctcagtcacaggggcaaacttcagcctacctcttgtttgc 440
Query: 241 gttgatgatctgtctctagaacatagccaccctgattcggaagtactgctgacatcccaa 300
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gttgatgaactgtctctagaacatagccaccctgattcggaagtactgctgacatcccaa 500
Query: 301 aaggatggccacactcgccctgagctgttagacagaaatggtgtgactgctgacctctaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaggatggccacactcgccctgagctgttagacagaaatggtgtgactgctgacctctaa 560
Query: 361 gttcactacattgtcacatccagaaaatgtcggtgatcccttgaacaatgctcgaggagg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gttcactacattgtcacatccagaaaatgtcggtgatcccttgaacaatgctcgaggagg 620
Query: 421 ctttctgaagagcggtgctcaggagctgtgatggtgctgcaggctgtgggaaagcattag 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ctttctgaagagcggtgctcaggagctgtgatggtgctgcaggctgtgggaaagcattag 680
Query: 481 atcagcggaatatttcctctctggtttttttccctttcagctggtgggctttccccctga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 atcagcggaatatttcctctctggtttttttccctttcagctggtgggctttccccctga 740
Query: 541 agtaactagcatttaaaca 559
|||||||||||||||||||
Sbjct: 741 agtaactagcatttaaaca 759
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 559
Length of database: 959
Length adjustment: 10
Effective length of query: 549
Effective length of database: 949
Effective search space: 521001
Effective search space used: 521001
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
