BAC Information

Click to search

BAC

Clone NameMSMg01-299D04
Chromosome11 (Build37)
Map Location 107,156,978 - 107,351,384
singlet/doubletdoublet
Overlap genePitpnc1, Psmd12
Upstream geneGh, Cd79b, Scn4a, 2310007L24Rik, Icam2, Ern1, LOC100041277, Tex2, Pecam1, Gm885, Polg2, Ddx5, Ccdc45, Smurf2, LOC666873, Kpna2, 1810010H24Rik, Bptf, LOC100042899, Nol11, LOC671692
Downstream geneA830035A12Rik, Helz, Cacng1, Cacng4, Cacng5, Prkca, Apoh, LOC100041381, Ccdc46
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299D04.T7 (MSMg01no299_d04.b1)MSMg01-299D04.TJ (MSMg01no299_d04.g1)
ACCAG426039AG426040
length730723
length of high quality
(start - end)
389 (44 - 432)345 (73 - 417)
definitionCHROMAT_FILE: MSMg01no299_d04.b1 PHD_FILE: MSMg01no299_d04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:03 2005CHROMAT_FILE: MSMg01no299_d04.g1 PHD_FILE: MSMg01no299_d04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(107,156,978 - 107,157,362)(107,351,040 - 107,351,384)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGAGAATCCGCGGAA
TTCCTGAAAGTCTTCTTTCGGTGAGCTTTAATAAAACTCAGTTTTGAGTG
TCACCTCTTGGGGACCATTGAAACTCCATCCAGGCAAAGTCCCTCTTAAA
TTAGCTATCTTGTATTCTCAGCACTAAGGAGATGACCTAATCTAAGGTGG
CTTAGGAAGAGGCACGGCCCCAGATCATACAGAAGGTGCCCAGCAGCTCT
GACATCTGCCAGCCACTCTTTACAGTCTAGCCAGTCACAAGGTGGCACAG
TGCCTGCCCCACAAATACAGCCATGCCCTGTAAGTAATTTGATCCTGCTC
AGGGTAGGAAGTTTTAAGATGTTTCTGGGTCCCCTCTCCACTCATTGCAA
TCACTTCCATTGCAGAAAGGAGGAAAGACAGGCACATTATAAGACAGCAA
AGCCAGACTATACGATATCCCATGCCTGGTCCCAGTGGGCCAGGGCCTCT
CTGAGGTTTCAGGTACAGAGCAGGGCTGGGAGACAGAGACTCAAGTGAGA
CTTGCACTGAGAGGCTCTGAGCGGCTATTCACACTATCGTTGCTTCCCTT
GTTGTCTTCATACCTTGGCTTCTATGCGGATGGAGAATTTCGGCAGGAAC
GAACACTGCTGGAGAACAAATAGACTTTGTACCAGTAGAGTATTTTGCCT
TCTTGTCTTTACTACGTCACTGGGCCTGCT
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCAGGACAGCCAGGGTTATACAGAGAAAC
CCTGTCTGGAAAAACCAAAACAAACAAACAAAAAAAGCAGAGAATGAAGA
CAATACAGGGCACTAGACCCTTTGAATAAAGTCATTTCTTTCCTTCCTTA
ACCCCAGTAGAAAAGGAAATTGACTGGAATGTCAGAGTAACCTATTTAGC
CCAGTGGGCAGCCTCTGATGGGGTCCAGGCACTGTGAGGTCATTATCATG
ACTTGACACTTTGAGCACAGAATATGTACTATACCCTGGTGACATCCCTG
GCCTTTCTCAGAATGCTTAGCTGTAAAGGGAAAACACACACATCCATTCT
GTAAGTATGTGCTTTTAGAGTGCCCTGGTGATTACAGCATTAAACCTAGG
GTTCTGTAGGCAAGGGAAACAATTATCACTGAGATCTTAGAGTCCCAACT
CTGGTAATTTTTCTTGGTCAAACCATTTTGGTCTAGAAATTTACCTCTAA
TCAACCATTCACTAAGAATAAAGCCAATAACTTAAAAGCAGCAGATAACG
CATTCACTTATTTGAATCCCAACAGATGCGAGCTATGGTGGCGCATGTCT
TACTCTCAGTACTCGGGAGGCCGAGTTAGGCGTATCTCTATGATTTCCCG
GCCATCCTGGGTCACACTGAGAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_d04.b1 MSMg01no299_d04.b1 CHROMAT_FILE:
MSMg01no299_d04.b1 PHD_FILE: MSMg01no299_d04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:03 2005
         (389 letters)



>mm_chr11_107156774_107157562
          Length = 789

 Score =  683 bits (353), Expect = 0.0
 Identities = 377/385 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcctgaaagtcttctttcggtgagctttaataaaactcagttttgagtgtcacctc 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 205 gaattcctgaaagtcttctttcggtgagctttaataaaactcagttttgagcgtcacctc 264

                                                                       
Query: 65  ttggggaccattgaaactccatccaggcaaagtccctcttaaattagctatcttgtattc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttggggaccattgaaactccatccaggcaaagtccctcttaaattagctatcttgtattc 324

                                                                       
Query: 125 tcagcactaaggagatgacctaatctaaggtggcttaggaagaggcacggccccagatca 184
           |||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 325 tcagcactaaggagatgatctaatctgaggtggcttaggaagaggcacggccccagatca 384

                                                                       
Query: 185 tacagaaggtgcccagcagctctgacatctgccagccactctttacagtctagccagtca 244
           ||||||||||||||||||||||||||||||||||| |||||||||  |||||||||||||
Sbjct: 385 tacagaaggtgcccagcagctctgacatctgccagtcactctttatggtctagccagtca 444

                                                                       
Query: 245 caaggtggcacagtgcctgccccacaaatacagccatgccctgtaagtaatttgatcctg 304
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 445 caaggtggcacagtgcctgccccacaaatacagccatgccctgtaagtaatttgatactg 504

                                                                       
Query: 305 ctcagggtaggaagttttaagatgtttctgggtcccctctccactcattgcaatcacttc 364
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 ctcagggtaggaagttttaagatgtttctgagtcccctctccactcattgcaatcacttc 564

                                    
Query: 365 cattgcagaaaggaggaaagacagg 389
           |||||||||||||||||||||||||
Sbjct: 565 cattgcagaaaggaggaaagacagg 589


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 389
Length of database: 789
Length adjustment: 9
Effective length of query: 380
Effective length of database: 780
Effective search space:   296400
Effective search space used:   296400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no299_d04.g1 MSMg01no299_d04.g1 CHROMAT_FILE:
MSMg01no299_d04.g1 PHD_FILE: MSMg01no299_d04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:03 2005
         (345 letters)



>mm_chr11_107350792_107351536
          Length = 745

 Score =  652 bits (337), Expect = 0.0
 Identities = 343/345 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggacagccagggttatacagagaaaccctgtctggaaaaaccaaaacaaacaaacaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 593 caggacagccagggttatacagagaaaccctgtctggaaaaaccaaaacaaacaaacaaa 534

                                                                       
Query: 61  aaaagcagagaatgaagacaatacagggcactagaccctttgaataaagtcatttctttc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 533 aaaagcagagaatgaagacaatacagggcactagaccctttgaataaagtcatttctttc 474

                                                                       
Query: 121 cttccttaaccccagtagaaaaggaaattgactggaatgtcagagtaacctatttagccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 473 cttccttaaccccagtagaaaaggaaattgactggaatgtcagagtaacctatttagccc 414

                                                                       
Query: 181 agtgggcagcctctgatggggtccaggcactgtgaggtcattatcatgacttgacacttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 agtgggcagcctctgatggggtccaggcactgtgaggtcattatcatgacttgacacttt 354

                                                                       
Query: 241 gagcacagaatatgtactataccctggtgacatccctggcctttctcagaatgcttagct 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 353 gagcacagaaaatgtactataccctggtgacatccctggcctttctcagaatgcttagct 294

                                                        
Query: 301 gtaaagggaaaacacacacatccattctgtaagtatgtgctttta 345
           ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 293 gtaaagggaaagcacacacatccattctgtaagtatgtgctttta 249


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)