BAC Information

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BAC

Clone NameMSMg01-299F09
Chromosome11 (Build37)
Map Location 82,563,231 - 82,730,018
singlet/doubletdoublet
Overlap geneCct6b, Ccdc16, Lig3, Rffl, Rad51l3, Fndc8, Nle1, Unc45b
Upstream geneAccn1, 5530401A14Rik, Ccl2, Ccl7, Ccl11, Ccl12, Ccl8, Ccl1, Tmem132e
Downstream geneSlfn5, Set8-ps, Slfn9, Slfn8, LOC668706, Slfn10, Slfn2, Slfn1, Slfn4, Slfn3, LOC100043636, LOC435271, Slfn14, Pex12, Ap2b1, Rasl10b, OTTMUSG00000000934, 1700020L24Rik, Mmp28, Taf15, OTTMUSG00000000990, Ccl5, Ccl9, Ccl6, LOC194905, Ccl3, Ccl4, OTTMUSG00000000971, Expi, 1100001G20Rik, 2700008B19Rik, LOC676191, Tcf2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299F09.T7 (MSMg01no299_f09.b1)MSMg01-299F09.TJ (MSMg01no299_f09.g1)
ACCAG426139AG426140
length764765
length of high quality
(start - end)
280 (38 - 317)249 (68 - 316)
definitionCHROMAT_FILE: MSMg01no299_f09.b1 PHD_FILE: MSMg01no299_f09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:14 2005CHROMAT_FILE: MSMg01no299_f09.g1 PHD_FILE: MSMg01no299_f09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(82,563,231 - 82,563,506)(82,729,770 - 82,730,018)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAAG
GCCTACTAAGGCAGTACCAGACCACCCAAGACTAGATAAAGAGACCTTGC
CTCAAAATAAACAAACATATGTAGTATATATGTGTATGTTTGTGTACTTG
TATGTTTAGTATACATTTAACATATATTAAAGCTGTCAAAACCAAAGGAG
AATATAAACAAACCCATGATGATATTGCTATAATATTAAAAAATGTTAAC
ACGTCTCAGTAATTACAGAATAAGCTGTCAGAATATTAATAAGGACACTG
AAGGTCTGAAAAACAACTTTAACTAAATTGCCCCCTTGACAGAAAACTGT
ACCTCATTACCTAGNTACGCCCGCCTGCCCGAGTACATAAAACATTATAA
ATAAATTCTCTCGAGCCAAGCTTGAAAAATAAAACTCACAAGATTGATGA
AAAAGGATTACCGTAGGCTCAGGGCCAGGCAGGGCAGTAAACATACAACC
CTGGCCTCCAAAAATAAAGTAAAATAATTAACTGACTCTATAAGCAAATC
TCAACACATTTCACAACAGTGAAATCTTATAGACTATGTCCCCTGCTATT
ATATAATTGAACTAGAAATCAATAACTACATTCTCCTCTATATTTTGAAA
ATAACACATTTAAAATAGAAATTACAAAATATTTTAAATGGATTGTGTTT
TCCAGCAAACCTCTTCCTATCTGTCCGCCAGAGTGAAGGACTCCCTATCT
ACCGGAAAGCCGTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXATTGGTCACAGAATGAATACACTGCCCCTCTTT
GGGCATCGACATCCAAGCTCTGACAGAAATAAATGAAAAATATTTCGATG
TTCACTAGAAGACTGGAGAAAAACATGAGACAGATCAAACCGTTTGGTTA
CAATGACTGTTACCAGTAAATATTTCAAAAAATTTTTTAATGTGTCAGCA
TGACCTCTTGGCAGTATTCCTAAATGAAACAAAGCATTATTTGAATGTGC
CAGTGTTTCTTGGGATCTTTTTACAGTGAGGCAAGTTAGATATCCCTCAT
AGGTGTTAAATCGTTTACACCCCCCCCCCCCAATATCCAGATGAGTGATG
TTTAATGAAATACTTTTTAATCAAAAAAAAAAACAAAATTTCGATAGGCA
AAATATCTGATTTTAAACAACAATGTCATCCGACTCTGCTGTTTAATTTG
CCACAATGACTTCACCCCAGTCTTGACCCTTCTTATGGTTAATGCCAGTT
TCTTTCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTTTTCCTTTT
TCTTTTTAAGCTCTATGCTTTATAATTTATTTATTACGGGGGAACTATAG
GTTAAAGATACCCTGCCAGAACTTGGTTTTCTTCTTCCCCTATGGGAATC
CAACTCACGTTTGTCAGACTTGGCAAGAGGCCCATTTTACCCTCTGGCTA
TTCTACTGGACCTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_f09.b1 MSMg01no299_f09.b1 CHROMAT_FILE:
MSMg01no299_f09.b1 PHD_FILE: MSMg01no299_f09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:14 2005
         (280 letters)



>mm_chr11_82563027_82563706
          Length = 680

 Score =  503 bits (260), Expect = e-147
 Identities = 272/276 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcaaggcctactaaggcagtaccagaccacccaagactagataaagagaccttgcc 64
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaaggcctacaaaggcagtaccagaccacccaagactagataaagagaccttgcc 264

                                                                       
Query: 65  tcaaaataaacaaacatatgtagtatatatgtgtatgtttgtgtacttgtatgtttagta 124
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||
Sbjct: 265 tcaaaataaacaaacatatgtaatatatatgtgtatgtttgtgtacttgtatgtttaata 324

                                                                       
Query: 125 tacatttaacatatattaaagctgtcaaaaccaaaggagaatataaacaaacccatgatg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 tacatttaacatatattaaagctgtcaaaaccaaaggagaatataaacaaacccatgatg 384

                                                                       
Query: 185 atattgctataatattaaaaaatgttaacacgtctcagtaattacagaataagctgtcag 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 atattgctataatattaaaaaatgttaacacgtctcagtaattacagaataagctgtcag 444

                                               
Query: 245 aatattaataaggacactgaaggtctgaaaaacaac 280
           ||||||||||||||||||||||| ||||||||||||
Sbjct: 445 aatattaataaggacactgaaggcctgaaaaacaac 480


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 680
Length adjustment: 9
Effective length of query: 271
Effective length of database: 671
Effective search space:   181841
Effective search space used:   181841
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no299_f09.g1 MSMg01no299_f09.g1 CHROMAT_FILE:
MSMg01no299_f09.g1 PHD_FILE: MSMg01no299_f09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:14 2005
         (249 letters)



>mm_chr11_82729570_82730218
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attggtcacagaatgaatacactgcccctctttgggcatcgacatccaagctctgacaga 60
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 449 attggtcacagaatgaatacactgcccctctttgggcatcggcatccaagctctgacaga 390

                                                                       
Query: 61  aataaatgaaaaatatttcgatgttcactagaagactggagaaaaacatgagacagatca 120
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 389 aataaatgaaaaatatttcgatgttcactggaagactggagaaaaacatgagacagatca 330

                                                                       
Query: 121 aaccgtttggttacaatgactgttaccagtaaatatttcaaaaaattttttaatgtgtca 180
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 329 aaccgtttggttacaatgactgttaccagtaaatatttcaaaaaaatttttaatgtgtca 270

                                                                       
Query: 181 gcatgacctcttggcagtattcctaaatgaaacaaagcattatttgaatgtgccagtgtt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gcatgacctcttggcagtattcctaaatgaaacaaagcattatttgaatgtgccagtgtt 210

                    
Query: 241 tcttgggat 249
           |||||||||
Sbjct: 209 tcttgggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)