BAC Information

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BAC

Clone NameMSMg01-299H03
Chromosome11 (Build37)
Map Location 51,399,174 - 51,399,488
singlet/doubletsinglet
Overlap geneAgxt2l2
Upstream geneAdamts2, Zfp354c, 9630041N07Rik, Grm6, Zfp454, Zfp2, Zfp354b, Prop1, Olfr1379-ps1, Olfr1378, Olfr1377, Olfr226-ps1, Olfr51, Olfr54, Olfr1375-ps1, Zfp354a, LOC100040275, LOC382518, Olfr1374-ps1, 5133400J02Rik, LOC622699, BC049762, Clk4, Col23a1
Downstream geneHnrpab, Nola2, Rmnd5b, C330016O10Rik, D930048N14Rik, 0610009B22Rik, Sec24a, LOC100040402, Sar1b, Phf15, D11Ertd497e, Ube2b, Cdkl3, LOC100040437, Ppp2ca, Olfr1373, Olfr1372-ps1, Olfr1371, Skp1a, Tcf7, Vdac1, 9530068E07Rik, LOC667659, LOC667667, LOC100040523
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299H03.T7 (MSMg01no299_h03.b1)MSMg01-299H03.TJ (MSMg01no299_h03.g1)
ACCAG426216AG426217
length759786
length of high quality
(start - end)
318 (39 - 356)292 (68 - 359)
definitionCHROMAT_FILE: MSMg01no299_h03.b1 PHD_FILE: MSMg01no299_h03.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:22 2005CHROMAT_FILE: MSMg01no299_h03.g1 PHD_FILE: MSMg01no299_h03.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:36:22 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAT
ACTAAAGTTTCCTATTACCCCTATAGTAGTCAATAGAGGTGAAGGCCTGC
TGTCAGCACCCTGCACGGGGCCAAGATGAGCACACTACATTTGTGGTCAT
GGATGGGTGGACTGTATATATGCCTGGCTTGACGTGAGTTCCACGTGGGA
CGTGCAGCTTGGACCTTGGCATGTGAACCTCTCAGGCCTGCCTGGTTTAG
CACAGCTATGGTGTGGAGTCTTTTCACAAAGACTGGGGTGCCCCCCGAGC
ATCCGATTCAGTTCTGTTCAACCCAGGCTATCAGTCAGATCTATGGCCTC
AGCCTCTTCTTTTGTCTCACCAACGCCGAGAGGCGTCATACTGACCATGA
GNCACGTTGTTGACACAGTCCAGGAACTCTCGCCCTTGCTCATCGTACAG
GTACTGCCCTTGGCCTCGGATAATCTTAACAGGATCCTCAGGAAAAAAGA
GTCTGCAGGAAGAGCTGTGGGGACAGGCAAAGGATCGACAACCCTGTCTG
AAGACTGACCGCCACTCATTACAGCCCCCTTCACTCCTTCCTGATTCTGG
CATGGACCAAAGCTTGCAGGGCACGGTGGAACTTCCCCTGCCCTCCCATT
CCTGCGAACAGGACGGAGCAGAAAGTTTCTGAGACAACGCTTAGCCTTGG
CGGCCCTCTTCCTTTTGCTTTGCCCCCTGAAATCCCTCCAGCCCCACTCG
ACACCGTTN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXTTCAGAGTGGTGAAAGTGCCTTTTGTATGTAAA
TGAGACATCTGGTGCCTCAGGTTCCTTAGCTGCAGGATGGAGCTGCCAGA
GGAGCCAAAGCAGAATTAGAAGGATTAGAGGGTCCAGATTTCAGCCCCAC
TTCTAGGGAGAAGGGTCTGCAGGTTGAGTTCAGACCCCCAACAATGATTA
CATACACCAGGCTGGTAAGGAAGCCTTGATAGAAACCCCAAATGATGGGT
TGCAGGAGCCTCTAAGTGAGTGAATGCCTCCATTAGGAGGGTGGGGCAAA
CTCCACAGGTAGGTCNCTGGCCCTTCCCCGTCTCATCCCAAGGTTTTCTT
CACTAGAAAGTCAATTATCCCTCTTACAATAAATTGTGTATGTGTGGATA
TACCTGTATGTGCACGTATGAGTCAGTGTGTGTCTGTGTGTGTGTGTCTG
TGTGCGTGTGTGTGTGTGTGTGTGTGCTCTCCTCCACCTCCCCCCTCCCG
CCCCTCCTCTCCCTCCCCTCCCTCCCTTTCCCGTACTCATATTTCTGTTC
TCCCTGCCCGTCCCTCATCCCCCTCAACCCGTTGCGCCCTCGCTCCTGAC
CGCGCGCCGCCCGTCCACTATTCTCCCCTCGTCCTCTTCCCATCCCTTTC
CCTCTCTCTCCACCCCCTTTCTCTTCTCACCCCTCTCCTCGCGTATCCTG
CTCGCCTCTTATCCCCCCGGTGTTCCCCCCTTTGCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_h03.b1 MSMg01no299_h03.b1 CHROMAT_FILE:
MSMg01no299_h03.b1 PHD_FILE: MSMg01no299_h03.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:22 2005
         (318 letters)



>mm_chr11_51398970_51399688
          Length = 719

 Score =  578 bits (299), Expect = e-169
 Identities = 311/315 (98%), Gaps = 1/315 (0%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatactaaagtttcctattacccctatagtagtcaatagaggtgaaggcctgctg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 gaattcatactaaagtttcctattacccctatagtagtcaatagaggtgaaggcctgctg 460

                                                                       
Query: 65  tcagcaccctgcacggggccaagatgagcacactacatttgtggtcatggatgggtggac 124
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tcagcaccctgcacgaggccaagatgagcacactacatttgtggtcatggatgggtggac 400

                                                                       
Query: 125 tgtatatatgcctggcttgacgtgagttccacgtgggacgtgcagcttggaccttggcat 184
           ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 399 tgtatatatgcctggtttgatgtgagttccacgtgggacgtgcagcttggaccttggcat 340

                                                                       
Query: 185 gtgaacctctcaggcctgcctggtttagcacagctatggtgtggagtcttttcacaaaga 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 gtgaacctctcaggcctgcctggtttagcacagctatggtgtggagtcttttcacaaaga 280

                                                                       
Query: 245 ctggggtgcccccc-gagcatccgattcagttctgttcaacccaggctatcagtcagatc 303
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ctggggtgcccccctgagcatccgattcagttctgttcaacccaggctatcagtcagatc 220

                          
Query: 304 tatggcctcagcctc 318
           |||||||||||||||
Sbjct: 219 tatggcctcagcctc 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 719
Length adjustment: 9
Effective length of query: 309
Effective length of database: 710
Effective search space:   219390
Effective search space used:   219390
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)