Query= MSMg01no299_j22.b1 MSMg01no299_j22.b1 CHROMAT_FILE:
MSMg01no299_j22.b1 PHD_FILE: MSMg01no299_j22.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:35 2005
(653 letters)
>mm_chr11_31769336_31770388
Length = 1053
Score = 1241 bits (642), Expect = 0.0
Identities = 648/650 (99%), Gaps = 1/650 (0%)
Strand = Plus / Plus
Query: 5 gaattcagatttgaataccagacctttcagaaaagatttcattcttgctgcttttctcta 64
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagatttgaatatcagacctttcagaaaagatttcattcttgctgcttttctcta 264
Query: 65 tgtatgtctccattcaagattcctctctggtgcttccaatcttcaatgtcaaatctttcg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgtatgtctccattcaagattcctctctggtgcttccaatcttcaatgtcaaatctttcg 324
Query: 125 agcagtggctctcaaccttcctaatgctgcgaccctttcatacagttactcgtgctgtgg 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 agcagtggctctcaaccttcctaatgctgcgaccctttcatacagttactcgtgctgtgg 384
Query: 185 tgacccctccccaccataaaattacttttgttgctacttcataactgtaattttgctact 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tgacccctccccaccataaaattacttttgttgctacttcataactgtaattttgctact 444
Query: 245 gttatgaattgtaatgtgaacatctgtgttttctgagggtcttaggcaatccctgtgaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 gttatgaattgtaatgtgaacatctgtgttttctgagggtcttaggcaatccctgtgaaa 504
Query: 305 gggtcattggacacctccctgaaggcatcacaacccagttgttgagaactactgttttaa 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 gggtcattggacacctccctgaaggcatcacaacccagttgttgagaactactgttttaa 564
Query: 365 gcactgatttagagacataagccaccaatgtaatataatgccatataaaagcatgagcgg 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 gcactgatttagagacataagccaccaatgtaatataatgccatataaaagcatgagcgg 624
Query: 425 tatcgagggtcatgtatgcctgtaaaaagagattccgaaggcagagtaggtaggttggag 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 tatcgagggtcatgtatgcctgtaaaaagagattccgaaggcagagtaggtaggttggag 684
Query: 485 acttactcctaaaacgaaatgagagtttgccaagaggagacgacaaaggcgtggaaaaag 544
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 acttactcctaaaacgaaatgagagtttgccaagaggagacgacaaaggcgtggaaaaag 744
Query: 545 gcacagagaatactgcccacaggacaatacggagtttggtctttattctccaggtaacgg 604
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 gcacagagaatactgcccacaggacaatacggagtttggtctttattctccaggtaacgg 804
Query: 605 actgccatttttaaaaag-tatgagcacaacaggaccgtgactggaattt 653
|||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 805 actgccatttttaaaaaggtatgagcacaacaggaccgtgactggaattt 854
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 653
Length of database: 1053
Length adjustment: 10
Effective length of query: 643
Effective length of database: 1043
Effective search space: 670649
Effective search space used: 670649
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no299_j22.g1 MSMg01no299_j22.g1 CHROMAT_FILE:
MSMg01no299_j22.g1 PHD_FILE: MSMg01no299_j22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:36:35 2005
(512 letters)
>mm_chr11_31842113_31843023
Length = 911
Score = 982 bits (508), Expect = 0.0
Identities = 511/512 (99%), Gaps = 1/512 (0%)
Strand = Plus / Minus
Query: 1 cagacaacaagccaaataaaactattgcttataatttttctagtctttggtattttgtga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 711 cagacaacaagccaaataaaactattgcttataatttttctagtctttggtattttgtga 652
Query: 61 tggcagcaaaacatggacttaggggtcttcagaaagtggtgcagggatgagggtcatctc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 651 tggcagcaaaacatggacttaggggtcttcagaaagtggtgcagggatgagggtcatctc 592
Query: 121 agccaagccctgaaggatgtagagtcagctttgtgtggagctgaagtcaggaataggtaa 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 591 agccaagccctgaaggatgtagagtcagctttgtgtggagctgaagtcaggaataggtaa 532
Query: 181 gatggagatgggcaaaggagaggccctgtaccactatggggaccttgcattagaggccca 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 531 gatggagatgggcaaaggagaggccctgtaccactatggggaccttgcattagaggccca 472
Query: 241 tgcacagaggcccatgcacagaggcccatgcacagaggcccatgcagagtggctggagct 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 471 tgcacagaggcccatgcacagaggcccatgcacagaggcccatgcagagtggctggagct 412
Query: 301 gtctgtggtcaagaagaaataggggagtttacagtggaggttgggcgaaggaggttttct 360
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 411 gtctgtggtcaagaagaaataggggagtttacagtggaggttggg-gaaggaggttttct 353
Query: 361 cttaaggcagtgagacagctccccctgctgagtaaaggcaaaccagagctctagctgcag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 352 cttaaggcagtgagacagctccccctgctgagtaaaggcaaaccagagctctagctgcag 293
Query: 421 gaagctggtggcataggccaccttagagaccagaggaacttgcctttaccatgcagttgt 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 292 gaagctggtggcataggccaccttagagaccagaggaacttgcctttaccatgcagttgt 233
Query: 481 tgttaatgaatgctagtgaaaatggggagcgc 512
||||||||||||||||||||||||||||||||
Sbjct: 232 tgttaatgaatgctagtgaaaatggggagcgc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 512
Length of database: 911
Length adjustment: 10
Effective length of query: 502
Effective length of database: 901
Effective search space: 452302
Effective search space used: 452302
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
