BAC Information

Click to search

BAC

Clone NameMSMg01-299P15
Chromosome11 (Build37)
Map Location 18,465,337 - 18,465,673
singlet/doubletsinglet
Overlap genenone
Upstream geneEtaa1, LOC327871, LOC627696, LOC627716, LOC665796
Downstream geneMeis1, LOC635455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-299P15.T7 (MSMg01no299_p15.b1)MSMg01-299P15.TJ (MSMg01no299_p15.g1)
ACCAG426597AG426598
length746741
length of high quality
(start - end)
325 (44 - 368)290 (75 - 364)
definitionCHROMAT_FILE: MSMg01no299_p15.b1 PHD_FILE: MSMg01no299_p15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:02 2005CHROMAT_FILE: MSMg01no299_p15.g1 PHD_FILE: MSMg01no299_p15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:37:03 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATGGCAGTATTCCCATTATAAAGGTAAATATTAAACTATTTTGCATA
AAGACTATCACATTGGAGGATGGGCTTCTCTGTAATTCAGCATCTAAACA
TTGGTCCCCTTATAGGTACACAGCATTGGGTTTTTTGTTTGTTTTTGTTT
TTAGTTTTTCGAGACAGGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAAC
TCCCTTTGTAGACCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTG
CCTCCCGAGTGCTGGGATTAAAGGCGTGTGCCACCACGCCCGGCTCATAG
CATTGTTTTATTTTACGCTTTAAAAAACAAAACAAAACAAAACAAAAAAC
AAACAAAAAAAAACTTCTTTGAACTCCAATCTTTATTTGTTACTAAGAGA
AATGTCTACCTGTGTCCCATTGAAGATGCACAGTGTGCTCTTCATATGCT
AGGTGCTAAGTCCTTGGCACACAGAATCTCTAGACCTGAGACTGTGAAAG
ACACTCCAGATTCTTAGTCACATAATCAGAGATACAGTAGGACAGAAAGG
CTTCAGTTAGATGTCACAGTGAGGAAATGGCATTCAGAACCACCAAATGT
CAGATTTTATTTAAAAAAAAAATCACCTGGAGTCCTGAGGTTGGGAGCCT
TTCCTGATGGATTTGAGGTCTTAGCTCTGGTTTCCCTCCTGGACGC
ATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTCTGATTAGATCTATCCCACATTTTA
AATTGGATTATTTGTTCTTTTGATATCTAGTTTTTTGAGTTCTTTATATA
TTTTGGATATTAGTTTTCTATCTGATGTGGAGTTGGCAAAAATATTTTTC
CCTTCTGTAGGCTGCTACTTTGTCTGCTAGACAGTATCTCTTGCCTTACT
AAAGGTTTTTCAGTACTATGAGATCTTATATTTATTAATTGTTGATCTTA
GTGCCTGATCTATTGGTGCTCTGTTCAGAAAGTTGCATTCTATGCCAATA
TGTTCAAGGTTATTTTTTACTTTCTCTTCTATCAAGTTCAGTGTATCTGA
TCTTATGCGAGATATTGAAATAGCCACACCAGCTTGTTTCTCAGGTCCAT
TTGCTTGGGATATCTTTTCTAACCTTTTACCCTGGGTCATGTCTATCCTT
GATGTGGAGGTGCAATTCTTGCATGCAGAAGAATTTATTCAGTTTTCGTT
CATACATTCTGTTAACCTTTGTCTTTTTATTGAATTGAGACCTTCGATAT
TGAGAGCTATCAATGACTAGTGATTGTTAATTCCTGTTATATTGNTGTAT
GTGTGCGTGCGTGCGTGCGTGCGTGCGTGCGTGCCTGTGTGTGTGTGACA
CAGAGAGACAGAGAGACAGAGAGAGACAACTTTTCTTGGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no299_p15.b1 MSMg01no299_p15.b1 CHROMAT_FILE:
MSMg01no299_p15.b1 PHD_FILE: MSMg01no299_p15.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:37:02 2005
         (325 letters)



>mm_chr11_18465134_18465858
          Length = 725

 Score =  590 bits (305), Expect = e-173
 Identities = 322/337 (95%), Gaps = 15/337 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcatggcagtattcccattataaaggtaaatattaaactattttgcataaagact 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcatggcagtattcccattataaaggtaaatattaaactattttgcataaagact 263

                                                                       
Query: 64  atcacattggaggatgggcttctctgtaattcagcatctaaacattggtccccttatagg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 atcacattggaggatgggcttctctgtaattcagcatctaaacattggtccccttatagg 323

                                                                       
Query: 124 tacacagcattgggttttttgtttgttttt---------------gtttttagtttttcg 168
           ||||||||||||||||||||||||||||||               |||||||||||||||
Sbjct: 324 tacacagcattgggttttttgtttgttttttgtttgtttgtttttgtttttagtttttcg 383

                                                                       
Query: 169 agacagggtttctctgtatagccctggctgtcctggaactccctttgtagaccaggctgg 228
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agacagggtttctctgtatagccctggctgtcctggaactccctttgtagaccaggctgg 443

                                                                       
Query: 229 cctcaaactcagaaatctgcctgcctctgcctcccgagtgctgggattaaaggcgtgtgc 288
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctcaaactcagaaatctgcctgcctctgcctcccgagtgctgggattaaaggcgtgtgc 503

                                                
Query: 289 caccacgcccggctcatagcattgttttattttacgc 325
           |||||||||||||||||||||||||||||||||||||
Sbjct: 504 caccacgcccggctcatagcattgttttattttacgc 540


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 325
Length of database: 725
Length adjustment: 9
Effective length of query: 316
Effective length of database: 716
Effective search space:   226256
Effective search space used:   226256
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)