BAC Information

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BAC

Clone NameMSMg01-300O12
Chromosome11 (Build37)
Map Location 72,826,359 - 72,987,541
singlet/doubletdoublet
Overlap geneP2rx1, LOC100043309, Camkk1, 1200014J11Rik, Itgae, Gsg2, P2rx5
Upstream geneAipl1, 6720460F02Rik, Pitpnm3, 4933427D14Rik, Txnl5, Med31, 4930563E22Rik, Slc13a5, Fbxo39, LOC628100, Tekt1, D130058I21Rik, Ggt6, Mybbp1a, 9830002I17Rik, LOC432577, Ube2g1, Ankfy1, Cyb5d2, Zzef1, LOC627119, Atp2a3
Downstream geneTmem93, Tax1bp3, Ctns, Carkl, Trpv1, Trpv3, Aspa, Spata22, Olfr20, Olfr376, Olfr377-ps1, Olfr1, Olfr75-ps1, Olfr378, Olfr379-ps1, Olfr380, Olfr381, Olfr382, Olfr383-ps1, Olfr385, Olfr386, Olfr387-ps1, 1700012C15Rik, Olfr388-ps1, Olfr389, Olfr390, Olfr391-ps1, Olfr392, Olfr393, Olfr394, Olfr395, Olfr396-ps1, Olfr23, Olfr22-ps1, Olfr397, Olfr398, Olfr139, Olfr399, OTTMUSG00000006163, LOC668567, Olfr400-ps1, Olfr401, Olfr402
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-300O12.T7 (MSMg01no300_o12.b1)MSMg01-300O12.TJ (MSMg01no300_o12.g1)
ACCAG427260AG427261
length786741
length of high quality
(start - end)
240 (120 - 359)284 (74 - 357)
definitionCHROMAT_FILE: MSMg01no300_o12.b1 PHD_FILE: MSMg01no300_o12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:10 2005CHROMAT_FILE: MSMg01no300_o12.g1 PHD_FILE: MSMg01no300_o12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 21:38:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(72,826,359 - 72,826,594)(72,987,261 - 72,987,541)
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAAT
TCAACTCTTCTGGATGGAGGCTCACCATTCTCCTTGAGCAATGCTGGAGG
GTCCCTTCCTAATGCTCCCGCACACAATGTGCTTTGTCACCTTCTCCCGC
TACCTGTCTGTCGCCCCCAGATTTGCCAGGCACTTTGTGCAGAACGGGAC
AAACCGTCGTCACCTCTTCAAGGTGTTTGGGATTCGCTTTGATATCCTTG
TGGATGGCAAGGTAAGTGTCCTATGTGAAGGGATGGCTGCCAAGGCACCT
TCCTGCTTTGGGTGTCTGTTGTTATGGATGATATGAAATGATATGATATT
GTTATTTTTGATATCACCGCACCGGCTATATTCAGAGAATTGCTTTTAAT
GACCCTTGTCCTATAAAAAAAAACAAAATCGCCTCTGAGCCAGTGTCCTG
ACTCTCCCACTATATCCTTGAGACTAGGGTACAAAGGCTATAGCCTTAAG
CTCACCTTTACCGACCCGTATTTGTTTCCTATGCCTACCCATTCTTTTGT
TACCTTTTGTTAACACACATTATCCGCGTTAATCCCCCTTACGCCTCTTA
CAGATTTACTACTAACTCGTCCCCTCCTTCCTTATTCTCTCGTTTCCTTC
CCACTCTTTCTTCCCTCCCCACTACCTCCATTTTCTACTCCTTTATTCCT
TCCTCTATATCCTTTATCTCACTATTCCTAACTCGCCTTTCTGCCCTTTC
TTTTCTGTCTCTCCCCCAACCTTTATCCTAACTATT
TGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXCTCAGATCCTGGAAGGTCAAAATAGGA
AGGAGCTCTTGGGCTAAGACTGTAGCCAATAAGCCAAGCAGTGCCCAGAA
AGGAATAAAAGTGTTTCCCCAAGTTTAGGAGTTCAAGTTCCTGACTCAGT
TCTTGAGTTAAAAGCCTGGTTTCACCTGTGGAAACTGTAATTCAGATCAG
GAGTTCAAGGCAAGTCTGGGCTACAGAAGACCCTGCCGGTTTTGTTGGGT
TGGTTTTTGTTGGGTTTTCTTATTTTGTTTTTAATATAAGCTATTTTCCA
TACATTGTGATGATTTACCCCCCCCCCCCCTATGCAGAAGGCAAGAAGTT
GGGGTGTGGCGTACTTTGAAAAAAAGAACAGCCCTGTGAGCAACTGGAGT
AAGATCCCTGGTCTTTCTGAGCCCCCAGCACCCTATTTGGTTCATGATGC
TGAGTCTACAGGTATATGCCACCTCCCCCAACTACCAGGTCCCTTCTGAT
TACCATCTGTAAGGGTTCTCCATGTGGTGGGTTGCTTTTCAGAGAGAAGC
TCTGTAGTGCCAAAAGACGCACTCATATATCCTCGGGATAGACGATAGTG
AGCCTGCTCTTCACCCCTGTATTTATATGTGCTTTTGGCCCTATATGAAT
ATATCATTTTCCAAAGGATTGTCCAGGTGCTCTGATGTTCC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no300_o12.b1 MSMg01no300_o12.b1 CHROMAT_FILE:
MSMg01no300_o12.b1 PHD_FILE: MSMg01no300_o12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:10 2005
         (240 letters)



>mm_chr11_72826159_72826798
          Length = 640

 Score =  433 bits (224), Expect = e-126
 Identities = 233/236 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gcacacaatgtgctttgtcaccttctcccgctacctgtctgtcgcccccagatttgccag 60
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 201 gcacacaatgtgctttgtcaccttctcccgctacctgtccgtcgcccccagatttgccag 260

                                                                       
Query: 61  gcactttgtgcagaacgggacaaaccgtcgtcacctcttcaaggtgtttgggattcgctt 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcactttgtgcagaatgggacaaaccgtcgtcacctcttcaaggtgtttgggattcgctt 320

                                                                       
Query: 121 tgatatccttgtggatggcaaggtaagtgtcctatgtgaagggatggctgccaaggcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tgatatccttgtggatggcaaggtaagtgtcctatgtgaagggatggctgccaaggcacc 380

                                                                   
Query: 181 ttcctgctttgggtgtctgttgttatggatgatatgaaatgatatgatattgttat 236
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttcctgctttggatgtctgttgttatggatgatatgaaatgatatgatattgttat 436


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 240
Length of database: 640
Length adjustment: 9
Effective length of query: 231
Effective length of database: 631
Effective search space:   145761
Effective search space used:   145761
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no300_o12.g1 MSMg01no300_o12.g1 CHROMAT_FILE:
MSMg01no300_o12.g1 PHD_FILE: MSMg01no300_o12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 21:38:10 2005
         (284 letters)



>mm_chr11_72987171_72987854
          Length = 684

 Score =  528 bits (273), Expect = e-154
 Identities = 279/281 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcagatcctggaaggtcaaaataggaaggagctcttgggctaagactgtagccaataag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 371 ctcagatcctggaaggtcaaaataggaaggagctcttgggctaagactgtagccaataag 312

                                                                       
Query: 61  ccaagcagtgcccagaaaggaataaaagtgtttccccaagtttaggagttcaagttcctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 311 ccaagcagtgcccagaaaggaataaaagtgtttccccaagtttaggagttcaagttcctg 252

                                                                       
Query: 121 actcagttcttgagttaaaagcctggtttcacctgtggaaactgtaattcagatcaggag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 251 actcagttcttgagttaaaagcctggtttcacctgtggaaactgtaattcagatcaggag 192

                                                                       
Query: 181 ttcaaggcaagtctgggctacagaagaccctgccggttttgttgggttggtttttgttgg 240
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 191 ttcaaggcaagtctgggctacagaagaccctgccggttttggtgggttggtttttgttgg 132

                                                    
Query: 241 gttttcttattttgtttttaatataagctattttccataca 281
            ||||||||||||||||||||||||||||||||||||||||
Sbjct: 131 attttcttattttgtttttaatataagctattttccataca 91


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)